Alternatives and similar repositories for damo-creformer:

Users that are interested in damo-creformer are comparing it to the libraries listed below

• yunguan-wang / SPROD
  SPROD: Spatial expression profiling de-noising
  ☆36Updated last year
• theislab / regvelo
  inferring regulatory cellular dynamics
  ☆36Updated last week
• mcgilldinglab / scSemiProfiler
  A computational method scSemiProfiler that provides affordable single-cell data for large-scale disease cohorts using deep generative mod…
  ☆22Updated 3 months ago
• zakieh-tayyebi / CellSpace
  Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace
  ☆39Updated 2 months ago
• wallet-maker / cytopus
  Single cell omics biology annotations
  ☆50Updated 3 weeks ago
• Center-for-Health-Data-Science / multiDGD
  ☆24Updated 2 months ago
• StatBiomed / SpatialDM
  Spatial direct messaging detected by bivariate Moran
  ☆25Updated 2 months ago
• cistrome / MIRA
  Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.
  ☆61Updated 11 months ago
• GuangyuWangLab2021 / cellDancer
  Predict RNA velocity through deep learning
  ☆66Updated last year
• edsgard / trendsceek
  Identify genes with spatial expression trends in single-cell gene expression data
  ☆50Updated 7 years ago
• multitalk / awesome-cell-cell-communication
  Collection of computational tools for cell-cell communication inference for single-cell and spatially resolved omics
  ☆39Updated 3 weeks ago
• theislab / scTab
  ☆57Updated 6 months ago
• Teichlab / drug2cell
  Gene group activity utility functions for Scanpy
  ☆71Updated 3 months ago
• cantinilab / Circe
  Co-accessibility network from single-cell ATAC-seq data. Python code, based on Cicero package (R).
  ☆20Updated last month
• cliffren / PENCIL
  PENCIL is a novel tool for singlecell data analysis to identify phenotype associated subpopulations and informative genes simultaneously.
  ☆28Updated last year
• huidongchen / simba
  SIMBA: SIngle-cell eMBedding Along with features
  ☆18Updated 11 months ago
• WanluLiuLab / scAtlasVAE
  ☆30Updated last month
• kunwang34 / PhyloVelo
  PhyloVelo, Phylogeny-based transcriptomic velocity of single cells
  ☆43Updated last year
• snehamitra / SCARlink
  ☆50Updated 6 months ago
• brianpenghe / python-genomics
  A set of files to do genomics analysis on python
  ☆18Updated 4 months ago
• kaizhang / single-cell-benchmark
  ☆10Updated last year
• hsmaan / Iniquitate
  Analysis of imbalanced data and its impacts in a scRNA-seq integration setting
  ☆30Updated 3 weeks ago
• theislab / multimil
  Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases
  ☆23Updated 4 months ago
• raphael-group / STARCH
  Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity
  ☆25Updated 8 months ago
• immunogenomics / TiRP
  code repository for Lagattuta et al. "Repertoire analyses reveal T cell receptor sequence features that influence T cell fate." Nat. Imm.…
  ☆12Updated 2 months ago
• dpeerlab / ENVI
  ☆46Updated 2 weeks ago
• JiangBioLab / DeepCCI
  ☆21Updated 2 years ago
• xryanglab / DeepLinc
  De novo reconstruction of cell interaction landscapes from single-cell spatial transcriptome data
  ☆17Updated 2 years ago
• theislab / scPoli_reproduce
  Reproducibility notebooks for scPoli
  ☆14Updated last year
• Teichlab / celltypist_wiki
  Materials and scripts for building cell type encyclopedia table
  ☆19Updated 2 months ago