alexandrovteam / pySM
Reference pipeline for FDR-controlled metabolite annotation for imaging mass spectrometry
☆19Updated 8 years ago
Alternatives and similar repositories for pySM:
Users that are interested in pySM are comparing it to the libraries listed below
- Mass spectrometry imaging applications for interactive analysis in MITK (M²aia)☆21Updated 2 weeks ago
- Cloud engine and platform for metabolite annotation for imaging mass spectrometry☆50Updated last month
- Mass spectrometry imaging toolbox☆55Updated 4 months ago
- A parser to read .imzML files with python☆40Updated 6 months ago
- A collection of common mz values found in mass spectrometry.☆19Updated 10 months ago
- ☆11Updated 3 years ago
- Chemical Similarity Enrichment analysis of metabolomics datasets☆28Updated 9 months ago
- ☆11Updated 2 years ago
- An R package of High-resolution Informatics Toolbox for Maldi-imaging Proteomics☆18Updated 3 months ago
- Assigning precursor-product ion relationships in indiscriminant MS/MS data☆12Updated last week
- pathway and network analysis for metabolomics☆40Updated 11 months ago
- Autonomous and accurate clustering of co-localized ion images in a self-supervised manner.☆11Updated 3 years ago
- ☆14Updated 2 years ago
- MAss spectra alignment tool for MSI data☆19Updated 2 years ago
- R package for optimized LC-MS spectra processing☆25Updated last week
- ☆16Updated 5 years ago
- Defined MRM transitions from untargeted metabolomics data☆10Updated last year
- MetNormalizer is used to normalize large scale metabolomics data.☆21Updated 4 years ago
- ☆37Updated last month
- MassDash: A web-based dashboard for streamlined DIA-MS visualization, analysis, prototyping, and optimization☆20Updated 2 weeks ago
- A global network optimization approach for untargeted LC-MS metabolomics data annotation and metabolite discovery☆46Updated last year
- ☆16Updated 9 months ago
- ☆12Updated 3 years ago
- MS/MS prediction for peptides☆22Updated 4 years ago
- The MetaRbolomics book. A review of R packages in BioC, CRAN, gitlab and github.☆33Updated 4 years ago
- rMSI processing methods using C++☆10Updated 3 years ago
- Workshop illustrating mass spectrometry data analysis in R and use of the updated xcms functionality for the preprocessing of LC-MS data.☆27Updated last year
- Construct database and identify metabolites.☆5Updated 2 years ago
- RHermes is a semi-targeted metabolomics package to deeply characterize biological and environmental samples.☆26Updated last month
- R package for MetFrag☆24Updated 7 years ago