liyao001 / BioQueue
A novel pipeline framework to accelerate bioinformatics analysis
☆29Updated 2 years ago
Alternatives and similar repositories for BioQueue:
Users that are interested in BioQueue are comparing it to the libraries listed below
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated 2 years ago
- My bioinfo toolbox☆49Updated last month
- conda recipes for genomic data☆85Updated 3 years ago
- (WIP) best-practices workflow for rare disease☆60Updated 8 months ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated last year
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆55Updated 7 years ago
- Tools for next-generation sequencing analysis☆88Updated 5 years ago
- Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline☆57Updated 5 years ago
- Mapped QC analysis program☆43Updated 6 years ago
- 10x Genomics Reads Simulator☆45Updated last year
- See the main fork of this repository here >>>☆38Updated 2 weeks ago
- Documenting usage and experience with bioinformatic tools☆41Updated 9 years ago
- Miscellaneous Bioinformatics scripts etc mostly in Python☆45Updated 2 weeks ago
- Tools for querying and analysis of genomic data☆27Updated 3 months ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆45Updated this week
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- A tool to benchmark mappers and different parameters within minutes☆44Updated 5 years ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 5 years ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 6 years ago
- Mutation Identification Pipeline. Read the latest documentation:☆44Updated last year
- Cancer Genome Project Insertion/Deletion detection pipeline based around Pindel☆28Updated 6 months ago
- Analysis from kallisto paper☆32Updated 9 years ago
- Thousand Variant Callers Project Repository☆72Updated 5 years ago
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Updated 6 years ago
- De novo transcriptome assembler for short reads☆62Updated 7 years ago
- small RNA analysis from NGS data☆37Updated 6 months ago
- RNAseq analysis pipeline☆24Updated 2 years ago
- Collection of CGAT NGS Pipelines☆43Updated 6 years ago
- Genomes on the Cloud, Mapping & Variant Calling Pipelines☆33Updated 8 years ago
- A software for the multispecies design of CRISPR/Cas9 libraries☆35Updated 2 years ago