Tian312 / EliIE
An information extraction system for free-text eligibility criteria
☆37Updated 6 years ago
Alternatives and similar repositories for EliIE:
Users that are interested in EliIE are comparing it to the libraries listed below
- A clinical BERT-based NLP tool for parsing clinical trial abstracts following the PICO framework☆45Updated 4 years ago
- ☆98Updated 3 years ago
- Public release of the DeepPhe analytic software☆30Updated 2 years ago
- Medical Relations and Entities Extraction☆36Updated 2 years ago
- Code for manipulating the structure of UMLS files and converting ontologies or sets of ontologies into a graph structure.☆41Updated 4 years ago
- A comprehensive NLP preprocessing package for clinical notes sentence boundary detection, tokenization☆31Updated 11 months ago
- A near real-time named-entity recognizer☆59Updated 11 months ago
- Classes for ClinicalTrials.gov related projects☆47Updated 5 years ago
- Health knowledge graph for 157 diseases and 491 symptoms, learned from >270,000 patients' data☆101Updated 4 years ago
- ☆34Updated 8 years ago
- ☆53Updated 5 years ago
- MedXN is a medication normalization system built upon Apache UIMA framework.☆23Updated last year
- a Python tool to extract and structure numeric lab test comparison statements from text☆22Updated last year
- Source code used to develop the OHDSI knowledge base of sources with information relevant for assessing assocations between drugs and hea…☆55Updated 6 years ago
- Saber is a deep-learning based tool for information extraction in the biomedical domain. Pull requests are welcome! Note: this is a work …☆102Updated 4 years ago
- Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research☆89Updated 2 years ago
- A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.☆80Updated this week
- Data and code from our "Inferring Which Medical Treatments Work from Reports of Clinical Trials", NAACL 2019. This work concerns inferrin…☆62Updated 3 years ago
- [in development] Tools to support Natural Language Processing of freetext to create structured data elements for analysis☆32Updated last year
- Predicting adverse drug reactions from a knowledge graph☆27Updated 4 years ago
- Named Entity Recognition for biomedical entities☆47Updated 2 years ago
- A convolutional neural network model for relation extraction.☆13Updated 2 years ago
- Python wraper for MetaMap☆171Updated 4 years ago
- Clinical Concept Extraction with Contextual Word Embedding☆40Updated 4 years ago
- Crowdsourced ground truth for medical relation extraction.☆69Updated 6 years ago
- [In Development] An application to parse freetext inclusion criteria and produce a structured cohort definition that can be executed agai…☆65Updated 9 months ago
- Rare disease identification from free-text clinical notes with ontologies and weak supervision☆29Updated 2 years ago
- ☆22Updated 2 years ago
- Implementation and demo of explainable coding of clinical notes with Hierarchical Label-wise Attention Networks (HLAN)☆61Updated 2 years ago
- Extracting biomedical relationships from literature with Snorkel 🏊☆58Updated 4 years ago