Tian312 / EliIE
An information extraction system for free-text eligibility criteria
☆36Updated 6 years ago
Alternatives and similar repositories for EliIE:
Users that are interested in EliIE are comparing it to the libraries listed below
- Medical Relations and Entities Extraction☆35Updated 2 years ago
- a Python tool to extract and structure numeric lab test comparison statements from text☆22Updated last year
- Public release of the DeepPhe analytic software☆30Updated 2 years ago
- Classes for ClinicalTrials.gov related projects☆48Updated 5 years ago
- Automatically exported from code.google.com/p/negex☆36Updated 2 years ago
- ☆96Updated 2 years ago
- A comprehensive NLP preprocessing package for clinical notes sentence boundary detection, tokenization☆30Updated 7 months ago
- Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research☆89Updated 2 years ago
- A clinical BERT-based NLP tool for parsing clinical trial abstracts following the PICO framework☆45Updated 4 years ago
- Source code used to develop the OHDSI knowledge base of sources with information relevant for assessing assocations between drugs and hea…☆56Updated 6 years ago
- ☆52Updated 4 years ago
- Health knowledge graph for 157 diseases and 491 symptoms, learned from >270,000 patients' data☆99Updated 4 years ago
- A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.☆76Updated this week
- [in development] Tools to support Natural Language Processing of freetext to create structured data elements for analysis☆32Updated last year
- Clinical Concept Extraction with Contextual Word Embedding☆40Updated 4 years ago
- Code for manipulating the structure of UMLS files and converting ontologies or sets of ontologies into a graph structure.☆40Updated 4 years ago
- Predicting adverse drug reactions from a knowledge graph☆28Updated 3 years ago
- [In Development] An application to parse freetext inclusion criteria and produce a structured cohort definition that can be executed agai…☆64Updated 5 months ago
- ICD-BERT: Multi-label Classification of ICD-10 Codes with BERT (CLEF 2019)☆73Updated last year
- A near real-time named-entity recognizer☆59Updated 7 months ago
- A neural named entity recognition and multi-type normalization tool for biomedical text mining☆174Updated 2 years ago
- Extracting biomedical relationships from literature with Snorkel 🏊☆59Updated 3 years ago
- A rule-based Python module for spitting documents into sections.☆12Updated 4 years ago
- Basic Python 3 tools to interact with UMLS lexica☆123Updated 6 years ago
- ☆22Updated 2 years ago
- Data structures and code to read/write BioC XML and Json.☆31Updated last year
- Platform enabling Rapid Annotation for Clinical Entity Recognition☆50Updated 2 years ago
- a module to calculate the MeSH similarity☆24Updated 3 years ago
- Saber is a deep-learning based tool for information extraction in the biomedical domain. Pull requests are welcome! Note: this is a work …☆102Updated 4 years ago
- Retrieve and process PubTator annotations☆43Updated last year