Tian312 / EliIELinks
An information extraction system for free-text eligibility criteria
☆38Updated 6 years ago
Alternatives and similar repositories for EliIE
Users that are interested in EliIE are comparing it to the libraries listed below
Sorting:
- Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research☆89Updated 2 years ago
- Public release of the DeepPhe analytic software☆30Updated 3 weeks ago
- Health knowledge graph for 157 diseases and 491 symptoms, learned from >270,000 patients' data☆102Updated 4 years ago
- a Python tool to extract and structure numeric lab test comparison statements from text☆22Updated 2 years ago
- Classes for ClinicalTrials.gov related projects☆47Updated 6 years ago
- A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.☆85Updated last week
- ☆55Updated 5 years ago
- Learning from Discharge Summaries to extract mentioned diagnoses using Hierarchical Attention Model☆34Updated 7 years ago
- Source code used to develop the OHDSI knowledge base of sources with information relevant for assessing assocations between drugs and hea…☆55Updated 7 years ago
- A near real-time named-entity recognizer☆61Updated 2 months ago
- A comprehensive NLP preprocessing package for clinical notes sentence boundary detection, tokenization☆32Updated last year
- ☆99Updated 3 years ago
- Medical Relations and Entities Extraction☆37Updated 3 years ago
- Basic Python 3 tools to interact with UMLS lexica☆123Updated 6 years ago
- Saber is a deep-learning based tool for information extraction in the biomedical domain. Pull requests are welcome! Note: this is a work …☆102Updated 5 years ago
- [In Development] An application to parse freetext inclusion criteria and produce a structured cohort definition that can be executed agai…☆70Updated 3 weeks ago
- A clinical BERT-based NLP tool for parsing clinical trial abstracts following the PICO framework☆46Updated 4 years ago
- Extracting biomedical relationships from literature with Snorkel 🏊☆58Updated 4 years ago
- Platform enabling Rapid Annotation for Clinical Entity Recognition☆49Updated 3 years ago
- A neural named entity recognition and multi-type normalization tool for biomedical text mining☆178Updated 3 years ago
- ☆69Updated 3 years ago
- A Python biomedical relation extraction package that uses a supervised approach (i.e. needs training data).☆157Updated 2 years ago
- [in development] Tools to support Natural Language Processing of freetext to create structured data elements for analysis☆33Updated last year
- A convolutional neural network model for relation extraction.☆12Updated 2 years ago
- Rare disease identification from free-text clinical notes with ontologies and weak supervision☆32Updated 2 years ago
- ☆23Updated 2 years ago
- An NLP framework for clinical phenotyping. Docker | Python | Solr | OMOP. http://claritynlp.readthedocs.io/en/latest/☆108Updated last year
- Clinical Concept Extraction with Contextual Word Embedding☆40Updated 5 years ago
- ☆70Updated 3 years ago
- MedXN is a medication normalization system built upon Apache UIMA framework.☆24Updated last year