An information extraction system for free-text eligibility criteria
☆38Jan 12, 2019Updated 7 years ago
Alternatives and similar repositories for EliIE
Users that are interested in EliIE are comparing it to the libraries listed below
Sorting:
- A light-weighted UMLS-based data augmentation for biomedical NLP tasks including Named Entity Recognition and sentence classification.☆10Apr 6, 2021Updated 4 years ago
- a Python tool to extract and structure numeric lab test comparison statements from text☆22Jul 31, 2023Updated 2 years ago
- Code and supplementary material for the HealthINF conference paper☆13Jan 19, 2021Updated 5 years ago
- Cataloging pharmacotherapies in clinical trial from ClinicalTrials.gov☆26Jun 17, 2016Updated 9 years ago
- Library for converting clinical trial eligibility criteria to a machine-readable format.☆178Mar 22, 2022Updated 3 years ago
- Use machine learning to find patterns of similar eligibility protocol criteria for clinical trials☆19Jan 9, 2019Updated 7 years ago
- ☆37Nov 16, 2020Updated 5 years ago
- Table compiling the list of biomedically-related corpora available for named entity recognition (and some also suitable for association d…☆18Mar 15, 2018Updated 7 years ago
- Collection of various biomedical data models in parseable formats.☆29Jan 5, 2026Updated 2 months ago
- Python library for working with BioC files☆13Mar 28, 2018Updated 7 years ago
- Python library for GeneiaTagger☆10May 7, 2015Updated 10 years ago
- Crowd-source tool to annotate, rank and generally enhance the clarity and accuracy of clinical trial information.☆16Mar 6, 2023Updated 3 years ago
- Data and basic scrubbing of the FDA Adverse Event Reporting System data☆14Aug 1, 2015Updated 10 years ago
- A framework for multisite longitudinal clinical trials built on Django☆34Feb 3, 2026Updated last month
- MEXPRESS is a data visualization tool designed for the visualization of TCGA expression, DNA methylation and clinical data.☆14Jul 23, 2020Updated 5 years ago
- Python wrapper for extracting information from Scirate☆13Jul 21, 2023Updated 2 years ago
- ☆13Oct 20, 2022Updated 3 years ago
- [In Development] An application to parse freetext inclusion criteria and produce a structured cohort definition that can be executed agai…☆75Mar 1, 2026Updated last week
- Open Source Clinical Content Analysis and Management System☆13Apr 2, 2025Updated 11 months ago
- Cool CSS Animation Demo in Ionic 4☆33Jan 7, 2023Updated 3 years ago
- Automatic synthesis of RCTs☆171Jul 18, 2022Updated 3 years ago
- High-performance tool for negation and uncertainty detection in radiology reports☆16May 3, 2024Updated last year
- Unsupervised domain adaptation method for relation extraction☆18Jul 16, 2018Updated 7 years ago
- Clinical Trial related calculation: descriptive statistics, power and sample size calculation, randomization.☆19Jan 17, 2025Updated last year
- An R package that facilitates access to a variety of OMOP CDM sample data sets.☆46May 22, 2025Updated 9 months ago
- Code to scrape/handle/extract data from various ICTRP Primary Registries☆25Mar 8, 2022Updated 4 years ago
- [under development] ETL materials to support proposal for CDM enhancements for clinical trial data☆24Jun 25, 2021Updated 4 years ago
- BioDSA: Framework for Vibe Prototyping of AI Agents for Biomedicine☆50Feb 12, 2026Updated 3 weeks ago
- Rare disease identification from free-text clinical notes with ontologies and weak supervision☆32May 6, 2023Updated 2 years ago
- Improving Public Access to Aggregate Content of ClinicalTrials.gov☆171Oct 20, 2025Updated 4 months ago
- PubMed PICO Element Detection Dataset☆57Jul 19, 2018Updated 7 years ago
- Data and code from our "Inferring Which Medical Treatments Work from Reports of Clinical Trials", NAACL 2019. This work concerns inferrin…☆66Aug 31, 2021Updated 4 years ago
- High-performance tool for negation and uncertainty detection in radiology reports☆165Jul 16, 2023Updated 2 years ago
- Miscellaneous tools for clinical ML☆29Oct 21, 2017Updated 8 years ago
- ☆68Jan 5, 2022Updated 4 years ago
- Data structures and code to read/write BioC XML and Json.☆33Aug 21, 2023Updated 2 years ago
- Public release of the DeepPhe analytic software☆30Nov 26, 2025Updated 3 months ago
- BioGrakn Knowledge Graph☆185Jan 15, 2021Updated 5 years ago
- An image analysis tool for measuring microorganism colony growth☆12Dec 12, 2025Updated 2 months ago