millanp95 / DeLUCSLinks
This repository contains all the source files required to run DeLUCS, a deep learning clustering algorithm for DNA sequences.
☆25Updated 2 years ago
Alternatives and similar repositories for DeLUCS
Users that are interested in DeLUCS are comparing it to the libraries listed below
Sorting:
- A repository for the GenGraph toolkit for the creation and manipulation of graph genomes☆51Updated 3 years ago
- Tokenizers and Machine Learning Models for biological sequence data☆25Updated 9 months ago
- Concise: Keras extension for regulatory genomics☆35Updated 2 years ago
- Interactive tutorials for using scikit-bio in biological research☆25Updated last month
- Supporting code for the paper "Measuring evolutionary rates of proteins in a structural context"☆13Updated 6 years ago
- For MHC-I protein-peptide binding predictions: Deep Learning model with CNN and Snakemake workflow☆12Updated 6 years ago
- ☆33Updated 2 years ago
- GOMCL: a toolkit to cluster, evaluate, and extract non-redundant associations of Gene Ontology-based functions☆21Updated last year
- MHC class II binding prediction☆14Updated 2 years ago
- CNN models for antibiotic resistance prediction in M. tuberculosis genomes. From Green & Yoon et al (forthcoming)☆23Updated 2 years ago
- A tool for computing the coding potential of RNA transcript sequences using deep learning classification model☆54Updated 2 years ago
- mRNN is an implementation of a Gated Recurrent Unit (GRU) network for classification of transcripts as either coding or noncoding.☆21Updated 6 years ago
- NEAT (NExt-generation Analysis Toolkit) simulates next-gen sequencing reads and can learn simulation parameters from real data.☆58Updated 2 weeks ago
- A Python code for generating k-mer features for a set of DNA/ genomic sequences.☆29Updated 11 months ago
- MAVE-NN: genotype-phenotype maps from multiplex assays of variant effect☆28Updated 2 weeks ago
- Large-scale automatic feature selection for biomarker discovery in high-dimensional OMICs data☆30Updated last year
- ☆15Updated 5 years ago
- Universal RObust Peak Annotator☆16Updated last year
- Python package to analyze DNA methylation data☆42Updated 7 months ago
- a python package for KEGG pathway enrichment analysis with multiple gene lists.☆36Updated 7 years ago
- GRAph-based Finding of Individual Motif Occurrences☆31Updated 9 months ago
- Peak calling tool for CLIP-seq data☆14Updated 4 years ago
- A deep learning approach for predicting high-confidence neoantigens by considering both the presentation possibilities of mutant peptides…☆43Updated 2 years ago
- ☆21Updated 2 months ago
- devCellPy is a Python package designed for hierarchical multilayered classification of cells based on single-cell RNA-sequencing.☆26Updated last year
- ☆23Updated 4 years ago
- BioBombe: Sequentially compressed gene expression features enhances biological signatures☆65Updated 11 months ago
- ☆32Updated last year
- Network Visualization using both GUI and Programming☆28Updated last month
- Github Repository for multiOmics Integration project involving genomics, epigenomics and transcriptomics☆12Updated 4 years ago