Alternatives and similar repositories for UCSanDiegoBioinformaticsI

Users that are interested in UCSanDiegoBioinformaticsI are comparing it to the libraries listed below

• Ashish438 / Python-for-Bioinformatics
  Python for Bioinformatics consist of a variety of python programmes,frequently used by bioinformaticians while handling biological data e…
  ☆44Updated last year
• SvetlanaUP / A-microbiologist-wants-to-compute
  This repo collects the list of learning online resources related to microbiome computational science and tools.
  ☆92Updated 6 months ago
• MiguelMSandin / SSNetworks
  A brief, quick and dirty introduction to Sequence Similarity Networks
  ☆21Updated 2 years ago
• kblin / ncbi-acc-download
  Download files from NCBI Entrez by accession
  ☆123Updated 9 months ago
• medema-group / BiG-SCAPE
  Similarity networks of biosynthetic gene clusters
  ☆115Updated this week
• WallauBioinfo / EEfinder
  ☆10Updated 2 months ago
• EddyRivasLab / infernal
  RNA secondary structure/sequence profiles for homology search and alignment
  ☆110Updated 6 months ago
• digo4 / Clinical-Genomics
  Here we are going to discuss variant calling on human datasets using GATK Best practices pipeline
  ☆40Updated last year
• paulstothard / sequence_manipulation_suite
  A collection of simple JavaScript programs for generating, formatting, and analyzing short DNA and protein sequences. The Sequence Manipu…
  ☆74Updated 6 months ago
• gbouras13 / pharokka
  fast phage annotation program
  ☆163Updated 2 weeks ago
• apcamargo / genomad
  geNomad: Identification of mobile genetic elements
  ☆238Updated 2 months ago
• sib-swiss / first-steps-with-python-training
  repository of the 3-day course "First steps with Python in Life Sciences" from SIB-training
  ☆59Updated 2 months ago
• cdanielmachado / carveme
  CarveMe: genome-scale metabolic model reconstruction
  ☆170Updated last month
• mdmparis / defense-finder
  Systematic search of all known anti-phage systems.
  ☆104Updated 4 months ago
• linnabrown / run_dbcan
  Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…
  ☆149Updated last month
• cruizperez / MicrobeAnnotator
  Pipeline for metabolic annotation of microbial genomes
  ☆147Updated 2 months ago
• Merck / deepbgc
  BGC Detection and Classification Using Deep Learning
  ☆143Updated last year
• WrightonLabCSU / DRAM
  Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes
  ☆280Updated this week
• Mehdi-Kn / RNAseq-Pipeline
  This repository offers a streamlined RNA-Seq analysis workflow implemented in R, designed to transform raw sequencing data into meaningfu…
  ☆27Updated 5 months ago
• HadrienG / tutorials
  Various bioinformatics tutorials
  ☆60Updated last year
• rcedgar / usearch12
  Open-source usearch
  ☆112Updated 11 months ago
• dcouvin / CRISPRCasFinder
  A Perl script allowing to identify CRISPR arrays and associated Cas proteins from DNA sequences
  ☆92Updated last year
• jotech / gapseq
  Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks
  ☆180Updated this week
• IndexThePlanet / Logan
  Logan Unitigs and Contigs
  ☆132Updated 3 weeks ago
• soedinglab / plass
  sensitive and precise assembly of short sequencing reads
  ☆155Updated 7 months ago
• oschwengers / bakta
  Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
  ☆514Updated 2 months ago
• KennthShang / PhaBOX
  Local version of the virus identification and analysis web server (tool set)
  ☆59Updated last month
• Joseph7e / MDIBL-T3-WGS-Tutorial
  Bacterial Genome Assembly and Assessment
  ☆26Updated 6 months ago
• linsalrob / ComputationalGenomicsManual
  Robs manual for the computational genomics and bioinformatics class.
  ☆251Updated 6 months ago
• gem-pasteur / macsyfinder
  MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.
  ☆61Updated 6 months ago