foldtree2
☆14Oct 20, 2026Updated last week
Alternatives and similar repositories for foldtree2
Users that are interested in foldtree2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes☆13Jan 23, 2026Updated 9 months ago
- Infers a phylogenetic tree from protein structures☆112Aug 20, 2026Updated 2 months ago
- Local homology search powered by ESM-2 language model, foldseek, hhsuite, and hmmer.☆18Jan 14, 2025Updated last year
- Open source code for AlphaFold.☆22Jan 28, 2022Updated 4 years ago
- RNA virus analysis toolkit☆25Oct 14, 2026Updated last week
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- ☆18Feb 16, 2026Updated 8 months ago
- ML toolset for creating TED: The Encyclopedia of Domains☆29May 29, 2025Updated last year
- ☆28May 15, 2024Updated 2 years ago
- ☆27Jun 8, 2022Updated 4 years ago
- ☆25Sep 22, 2026Updated last month
- Maximum likelihood structural phylogenetics by including Foldseek 3Di characters. Supporting Information for Puente-Lelievre et al. struc…☆25Updated this week
- Python version of Generally Applicable Gene-set Enrichment for Pathway Analysis (GAGE) - with extra features☆15Sep 16, 2026Updated last month
- A Pyrodigal extension to predict genes in RNA viruses.☆12May 3, 2026Updated 5 months ago
- DeepSeMS: a large language model reveals hidden biosynthetic potential of the global ocean microbiome.☆16Apr 24, 2026Updated 6 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆21Dec 22, 2025Updated 10 months ago
- VirBot: a protein-based RNA virus detector for metagenomic data☆35Jul 29, 2024Updated 2 years ago
- Database of virus RdRp barcode sequences☆11Sep 11, 2026Updated last month
- AF2chi implementation code for localColabFold☆10Oct 8, 2026Updated 2 weeks ago
- Phylogenetic Clustering (Phyloclustering)☆10Sep 6, 2023Updated 3 years ago
- This is Phyne: a Rust crate for indel-aware phylogenetics☆13Oct 20, 2026Updated last week
- ☆10Feb 25, 2026Updated 8 months ago
- SSAlign☆47Oct 17, 2026Updated last week
- Cython bindings and Python interface to Jess, a 3D template matching software for protein structures. Now 10x faster!☆12Aug 25, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆53Sep 25, 2024Updated 2 years ago
- Database of anaerobic hydrocarbon degradation genes used for functional gene searching of metagenome data sets☆13Aug 31, 2016Updated 10 years ago
- Download refseq-genomic data and prepare it for Kraken☆11Jan 20, 2017Updated 9 years ago
- Interactive phylogenetic tree based on D3.js☆16Mar 25, 2018Updated 8 years ago
- Pipeline for identification of eukaryotic contigs in metagenomic assemblies☆14Mar 14, 2024Updated 2 years ago
- ☆15Jun 23, 2026Updated 4 months ago
- Git for genomes☆38Updated this week
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning"☆10Apr 29, 2021Updated 5 years ago
- Deep Learning Framework for Transposable Element Discovery and Annotation☆12Aug 18, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- FEDKEA: Fine-tuned ESM-2 and Distance-based KNN for Enzyme Annotation☆12Oct 31, 2025Updated 11 months ago
- ☆12Jun 3, 2025Updated last year
- Gene tree - species tree reconciliation from gene tree distributions☆44Oct 15, 2026Updated last week
- STRIDE: Protein secondary structure assignment from atomic coordinates☆16Apr 25, 2022Updated 4 years ago
- Computational Analysis of Gene Expression Evolution☆49Apr 17, 2026Updated 6 months ago
- ☆13Apr 5, 2022Updated 4 years ago
- Modeling gene duplication, loss, and coalescence (through parsimony)☆10Jun 18, 2020Updated 6 years ago