CNN models for antibiotic resistance prediction in M. tuberculosis genomes. From Green & Yoon et al (forthcoming)
☆28Jan 19, 2023Updated 3 years ago
Alternatives and similar repositories for MTB-CNN
Users that are interested in MTB-CNN are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆11Apr 17, 2023Updated 3 years ago
- runjob is a program for managing a group of related jobs running on a compute cluster☆11Jul 26, 2026Updated last month
- This is a LaTeX template for JAMIA.☆28May 4, 2024Updated 2 years ago
- This repository contains R code for building a heatmap and histogram with the output of FastANI☆18Sep 14, 2021Updated 5 years ago
- A program for degenerate primer design for broad taxonomic-range PCR for microbial ecology studies☆32Jun 9, 2023Updated 3 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Flexible workflow designed for bacterial WGS analyses (annotation, core/pan-genome reconstruction, phylogeny)☆12Aug 6, 2023Updated 3 years ago
- ☆13Apr 23, 2025Updated last year
- Mycobacterium tuberculosis next generation sequence analysis☆26Oct 11, 2019Updated 6 years ago
- Large scale ancestry inference from PCA data☆24May 2, 2023Updated 3 years ago
- Single Cell Pretrained Regulatory network INference from Transcripts☆11Sep 17, 2024Updated 2 years ago
- General purpose tools for every-day sequencing bioinformatics. If you use any of these tools, please acknowledge this repository (there a…☆12Oct 13, 2020Updated 5 years ago
- pySCM: The Set Covering Machine in Python☆15Apr 18, 2025Updated last year
- ☆48Jul 31, 2024Updated 2 years ago
- R package for the identification of cancer-associated mutated genes using gene expression and mutation data.☆11Oct 29, 2021Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- hazard and excess hazard modelling with multidimensional penalized splines☆12Mar 25, 2026Updated 5 months ago
- My contributions to the weekly tidytuesday datasets and other data visualizations Made entirely using R (RLang).☆15Jan 19, 2023Updated 3 years ago
- Code & utilities for the manuscript "Lineage Recording Reveals the Phylodynamics, Plasticity and Paths of Tumor Evolution"☆14May 27, 2023Updated 3 years ago
- Multiple trajectory alignment of time-series data☆13Oct 14, 2023Updated 2 years ago
- Prediction of horizontal gene transfer (HGT) using graph convolutional network☆13Apr 25, 2022Updated 4 years ago
- Analysing the genomic context of mobile genes☆11Jul 21, 2025Updated last year
- R package for microbial pangenomics☆25Apr 12, 2022Updated 4 years ago
- ☆35Jan 12, 2017Updated 9 years ago
- A bash/biobash library for workflow and pipeline design☆10Jul 2, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- m5C mapping and site calling pipeline.☆13Jan 22, 2024Updated 2 years ago
- Script used to identify de novo variants from sequencing data.☆12Mar 2, 2017Updated 9 years ago
- Prostate Cancer Alteration Signature Analysis https://xsliulab.github.io/PC_CNA_signature/☆13May 17, 2021Updated 5 years ago
- Biological sequence clustering tool with dynamic threshold☆26Oct 2, 2023Updated 2 years ago
- ☆12May 29, 2019Updated 7 years ago
- MGnify oriented implementation for the Marine Genomic Observatories oriented pipeline, developed in the framework of an EOSC-Life funded …☆10May 12, 2026Updated 4 months ago
- materials from data science dojo☆17Aug 15, 2017Updated 9 years ago
- Native Python library for generic sequence alignment☆57Apr 16, 2020Updated 6 years ago
- Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat☆52Jun 6, 2026Updated 3 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Convolutional autoencoder for genotype data☆15Feb 22, 2022Updated 4 years ago
- ☆18Jun 11, 2024Updated 2 years ago
- Gateway to Aging: Spousal Concordance☆10Jun 9, 2023Updated 3 years ago
- ☆18Feb 19, 2021Updated 5 years ago
- Deep learning-based automated TICI (Thrombolysis In Cerebral Infarction) scoring for DSA-based assessment of mechanical thrombolysis resp…☆11Jun 9, 2022Updated 4 years ago
- Predict genic elements as splice sites, exons or genes, along eukaryotic DNA sequences☆18Jul 18, 2026Updated 2 months ago
- Deep learning prognosis for lung cancer☆13Apr 2, 2019Updated 7 years ago