aggreen / MTB-CNNLinks
CNN models for antibiotic resistance prediction in M. tuberculosis genomes. From Green & Yoon et al (forthcoming)
☆25Updated 2 years ago
Alternatives and similar repositories for MTB-CNN
Users that are interested in MTB-CNN are comparing it to the libraries listed below
Sorting:
- SmallSeqFlow: A streamlined, notebook-based bulk RNA-seq analysis pipeline optimized for small-sample studies with modular extensions.☆14Updated 6 months ago
- A toolkit for training deep learning models on genotype, tabular, sequence, image, array and binary data.☆41Updated last month
- Predicting gene expression levels from genomic sequences☆54Updated 5 years ago
- ☆74Updated 10 months ago
- ☆17Updated 4 years ago
- Clinical interpretation of somatic mutations in cancer☆47Updated 6 months ago
- Prediction fitness of leaves on a genealogical tree☆12Updated 10 years ago
- Computational framework to identify promoter sequences from RNA-seq datasets☆10Updated last year
- a python package for KEGG pathway enrichment analysis with multiple gene lists.☆36Updated 7 years ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆85Updated 3 months ago
- ☆72Updated 2 months ago
- JARVIS: a comprehensive deep learning framework to prioritise non-coding variants in whole genomes☆23Updated 7 months ago
- Tool package to perform in-silico CRISPR analysis and assessment☆30Updated last year
- A continually expanding collection of RNA-seq tools☆51Updated 10 months ago
- Time-Course Multi-Omics data integration☆25Updated last year
- APA Regression Net - Predict and Engineer Alternative Polyadenylation☆39Updated 3 years ago
- This is a python package for genomics study with a GCN framework.☆42Updated 8 months ago
- Deep representation learning for disease prediction based on microbiome data☆59Updated 2 years ago
- a novel encoding method for viral identification in metagenomics☆15Updated last year
- mantis-ml: Stochastic semi-supervised learning to prioritise genes from high throughput genomic screens☆30Updated last year
- Best practices for applying machine learning to bacterial 16S rRNA gene sequencing data☆31Updated 5 years ago
- ☆26Updated last year
- ✂️ Deep learning-based splice site predictor that improves spliced alignments☆54Updated 6 months ago
- Analysis framework for integrating gut microbiome and host gene expression data☆33Updated 3 years ago
- MAVE-NN: genotype-phenotype maps from multiplex assays of variant effect☆28Updated 2 weeks ago
- Cross-population polygenic prediction☆88Updated 9 months ago
- Phenome Exome Association and Correlation Of Key phenotypes☆27Updated 4 years ago
- BACNET is a Java based platform to develop website for multi-omics analysis☆13Updated 2 years ago
- Sturgeon is a CNS neural network classifier☆38Updated 9 months ago
- MGM (Microbial General Model) as a large-scaled pretrained language model for interpretable microbiome data analysis.☆31Updated 4 months ago