aggreen / MTB-CNNLinks
CNN models for antibiotic resistance prediction in M. tuberculosis genomes. From Green & Yoon et al (forthcoming)
☆23Updated 2 years ago
Alternatives and similar repositories for MTB-CNN
Users that are interested in MTB-CNN are comparing it to the libraries listed below
Sorting:
- SmallSeqFlow: A streamlined, notebook-based bulk RNA-seq analysis pipeline optimized for small-sample studies with modular extensions.☆12Updated 4 months ago
- Time-Course Multi-Omics data integration☆25Updated last year
- Comprehensive design of CRISPR gRNAs for nucleases and base editors☆23Updated 3 months ago
- Computational framework to identify promoter sequences from RNA-seq datasets☆10Updated last year
- ☆12Updated last year
- Tool package to perform in-silico CRISPR analysis and assessment☆28Updated last year
- pathway based data integration and visualization☆41Updated 2 months ago
- Analysis framework for integrating gut microbiome and host gene expression data☆32Updated 3 years ago
- MetaLogo: a heterogeneity-aware sequence logo generator and aligner☆21Updated 2 years ago
- A Python package for creating high-quality manhattan and Q-Q plots from GWAS results.☆45Updated last year
- Analysis pipeline for the GUIDE-seq assay.☆26Updated last month
- ☆18Updated 2 years ago
- ☆8Updated 5 years ago
- A pipeline to identify pathogenic microorganisms from scRNA-seq raw data.☆27Updated last year
- visual analysis of your VCF files☆34Updated 2 years ago
- Microbial analysis in TCGA data☆91Updated last year
- DNA methylation studies of mammalian species☆35Updated 7 months ago
- A continually expanding collection of RNA-seq tools☆50Updated 8 months ago
- A script to make downloading of SRA/GEO data easier☆31Updated last year
- ☆27Updated 2 years ago
- This repository contains computer codes for main analyses of the manuscript titled 'Multi-omic Landscape of Airway Microbe-Host Interacti…☆32Updated 2 years ago
- circular RNA quantification tools☆30Updated last year
- optimization of ribosome P-site positioning in ribosome profiling data☆52Updated 4 months ago
- ☆70Updated 8 months ago
- ☆19Updated last year
- BACNET is a Java based platform to develop website for multi-omics analysis☆13Updated 2 years ago
- Motif Scan and Enrichment Analysis (MoSEA)☆16Updated 4 years ago
- Re-analysis of data provided by Gihawi et al. 2023 bioRxiv☆26Updated last year
- Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq data☆31Updated 3 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated last year