deepomicslab / GCNFrameLinks
This is a python package for genomics study with a GCN framework.
☆44Updated last year
Alternatives and similar repositories for GCNFrame
Users that are interested in GCNFrame are comparing it to the libraries listed below
Sorting:
- Predicting gene expression levels from genomic sequences☆55Updated 5 years ago
- ☆83Updated last month
- code to run sei and obtain sei and sequence class predictions☆109Updated 3 years ago
- SpliceTransformer(SpTransformer) is a deep learning tool to predict tissue specific splicing site from pre-mRNA sequence☆32Updated last year
- APA Regression Net - Predict and Engineer Alternative Polyadenylation☆40Updated 4 years ago
- ☆71Updated last month
- ☆34Updated 2 years ago
- ☆36Updated 3 years ago
- Microbial analysis in TCGA data☆94Updated last year
- ☆33Updated 3 years ago
- ☆25Updated 2 years ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆89Updated last month
- A suite of tools for evolutionary and functional analysis of microRNA binding sites http://www.targetscan.org☆45Updated 7 years ago
- A positive-unlabeled ensemble learning framework for disease gene prioritization.☆20Updated last month
- Deep learning for modeling gene regulatory network☆22Updated 4 years ago
- Regression-based annotation of protein-coding sequences from ribosome profiling data☆32Updated 5 years ago
- Analysis pipeline for the GUIDE-seq assay.☆29Updated 4 months ago
- ☆24Updated 3 months ago
- Bioinformatic tool for Splice site Strength Estimation using RNA-seq☆20Updated 5 months ago
- A Transformer-based model for read-level DNA methylation pattern identification and tumour deconvolution☆39Updated 9 months ago
- A supervised learning model based on Graph Neural Network to predict gene co-expression from chromatin contacts☆12Updated 2 years ago
- Computational framework to identify promoter sequences from RNA-seq datasets☆11Updated 2 years ago
- MeRIPseqPipe：An integrated analysis pipeline for MeRIP-seq data based on Nextflow.☆42Updated last year
- LncADeep is an ab initio lncRNA identification and functional annotation tool based on deep learning☆29Updated 7 years ago
- Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…☆71Updated 2 years ago
- A toolkit for training deep learning models on genotype, tabular, sequence, image, array and binary data.☆42Updated last week
- Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction☆22Updated 2 years ago
- Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data☆43Updated 2 months ago
- Pipeline for generating reference and perturbed sequences for input into predictive models.☆11Updated last year
- ☆25Updated 3 years ago