griffithlab / rnaseq_tutorial_v1Links
Archive of original RNAseq.wiki tutorial that accompanied PLoS Comp Bio paper
☆13Updated 8 years ago
Alternatives and similar repositories for rnaseq_tutorial_v1
Users that are interested in rnaseq_tutorial_v1 are comparing it to the libraries listed below
Sorting:
- A continually expanding collection of RNA-seq tools☆50Updated 7 months ago
- Unsupervised correction of gene independent cell responses to CRISPR-cas9☆50Updated 2 years ago
- A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.☆46Updated 2 years ago
- A library for counting small kmer frequencies in nucleotide sequences.☆26Updated 7 months ago
- This repo contains tutorials for different NGS analysis methods☆13Updated 3 years ago
- viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data☆27Updated 7 months ago
- Integrative analysis pipeline for pooled CRISPR functional genetic screens☆30Updated last year
- Pipeline for Somatic Variant Calling with WES and WGS data☆21Updated last year
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated last year
- Bioinformatic pipeline for identifying dsDNA breaks by marker based incorporation, such as breaks induced by designer nucleases like Cas9…☆21Updated last month
- RNA editing quantification in deep transcriptome data☆15Updated 2 years ago
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆28Updated 3 years ago
- ☆18Updated 9 years ago
- Circular RNA Identification for Nanopore Sequencing☆19Updated last year
- simplified cellranger for long-read data☆19Updated last month
- Tool package to perform in-silico CRISPR analysis and assessment☆27Updated last year
- Gene Set Enrichment Analysis and Over Representation Analysis analysis using R☆20Updated 5 years ago
- documentation for trackViewer☆29Updated 5 years ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆36Updated 6 years ago
- ☆38Updated last week
- ☆25Updated 6 months ago
- ☆49Updated 4 years ago
- ☆20Updated 5 years ago
- Fast RNAseq pipeline☆10Updated 2 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- ☆39Updated 8 months ago
- A list of alternative splicing analysis resources☆43Updated 2 months ago
- Pipeline for Ribosome Profiling Data☆16Updated last year
- ☆15Updated 2 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆35Updated 11 months ago