Using ggtree to Visualize Data on Tree-Like Structure
☆25Mar 6, 2020Updated 6 years ago
Alternatives and similar repositories for ggtree-current-protocols
Users that are interested in ggtree-current-protocols are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Nextflow pipeline for generation of phylogenetic trees to be visualized in Auspice.☆11Jan 6, 2026Updated 8 months ago
- Two methods for mapping and visualizing associated data on phylogeny using ggtree☆12Dec 25, 2018Updated 7 years ago
- ggtree version of plotTree.R☆18Nov 12, 2018Updated 7 years ago
- A simple script to run an alignment with nucmer and visualise its results.☆10Apr 17, 2023Updated 3 years ago
- Visualization of Viral Genetic Reassortment☆21Aug 29, 2026Updated 3 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- scripts used to analyse horizontal transfer and evolution of transposable elements in 307 vertebrate species☆11May 16, 2021Updated 5 years ago
- polysat 1.7: tools for polyploid microsatellite analysis☆12Dec 20, 2024Updated last year
- ccfind - circular complete genome finder with clues of terminal redundancy☆16Mar 5, 2026Updated 6 months ago
- ☆13Nov 30, 2018Updated 7 years ago
- A repo comparing syntax in R and Python for various tasks. Not comprehensive, but a subset of lines to get one started☆12Dec 3, 2018Updated 7 years ago
- an R package for beginners☆16Jul 9, 2023Updated 3 years ago
- ☆11Oct 1, 2019Updated 6 years ago
- Visualize whole genome alignments as linear maps☆74Mar 27, 2026Updated 5 months ago
- A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences☆67Sep 1, 2026Updated 3 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Custom scripts for monotreme genome project☆19Jan 12, 2021Updated 5 years ago
- rapid serotyping of Vibrio parahaemolyticus from whole genome sequencing data using serogroup-specific genes☆10Sep 2, 2021Updated 5 years ago
- UPHL's Reference Free Pipeline☆29Sep 4, 2026Updated 2 weeks ago
- Analysis of RNAseq data from (host-associated) microbial mixtures☆12Nov 25, 2019Updated 6 years ago
- useful functions for ggplot☆18Jul 2, 2026Updated 2 months ago
- A Tidy Tool for Phylogenetic Tree Data Manipulation☆61Jul 2, 2026Updated 2 months ago
- Circular bacterial genome plots based on BLAST or NUCMER/PROMER alignments☆110Dec 11, 2023Updated 2 years ago
- Bioinformatics pipeline for the generation and analysis of the DrosEU data of 2014.☆11Nov 14, 2024Updated last year
- Inferring spatiotemporal dynamics of H5N1 influenza from sequence data☆10Sep 6, 2013Updated 13 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- In silico serotyping, finetyping and Bexsero antigen sequence typing of Neisseria meningitidis☆17Feb 19, 2026Updated 7 months ago
- Compilation of tutorials for RevBayes☆23Aug 20, 2018Updated 8 years ago
- Straightforward & minimalistic removal of poorly aligned regions in sequence alignments.☆17Mar 18, 2019Updated 7 years ago
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Jun 9, 2026Updated 3 months ago
- Explore spaces of phylogenetic trees☆30Aug 28, 2025Updated last year
- R Bindings for htslib/bcf☆10Oct 4, 2023Updated 2 years ago
- misFinder: Identify mis-assemblies in an unbiased manner using reference and paired-end reads☆10Oct 17, 2015Updated 10 years ago
- Pathogen evolution, selection and immunity☆47Mar 5, 2024Updated 2 years ago
- Bacterial Genomics workflow for short(Illumina) and long-read (Oxford Nanopore) sequencing data☆12Feb 20, 2026Updated 7 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- GrapeTree is a fully interactive, tree visualization program, which supports facile manipulations of both tree layout and metadata. Click…☆91Jul 17, 2026Updated 2 months ago
- Source code from Zhang et al., (2014) Genomic data of avian phylogenomics project. GigaScience 3:26☆37Dec 21, 2023Updated 2 years ago
- Targeted Detection and Reconstruction of Plasmids☆22May 7, 2024Updated 2 years ago
- 🧬 Viral genome reference alignment☆12Jan 26, 2021Updated 5 years ago
- ☆12Dec 22, 2025Updated 9 months ago
- ☆68Jul 8, 2016Updated 10 years ago
- Examples of application of comparative methods in R☆60Oct 3, 2022Updated 3 years ago