BiomedSciAI / Geno4SDLinks
An python omics data toolkit for the analysis across biological scales
☆11Updated last year
Alternatives and similar repositories for Geno4SD
Users that are interested in Geno4SD are comparing it to the libraries listed below
Sorting:
- Cancer Suppressor Gene and Oncogene Prediction using Deep Learning (CNN)☆10Updated 7 years ago
- Detects hotspot regions for somatic mutations in 3D protein structures☆3Updated last year
- a framework for predicting global protein-protein interaction networks from dynamic mass spec data☆24Updated last year
- ☆18Updated last week
- ☆21Updated last month
- CLUMPS adapted to post-translational modifications.☆9Updated 2 months ago
- analyze_geo_microarrays.py : Differential expression analysis of published microarrays datasets from the NCBI Gene Expression Omnibus (GE…☆11Updated 4 years ago
- BioLearns: Computational Biology and Bioinformatics Toolbox in Python☆12Updated 2 years ago
- Python package for analyzing and visualizing iModulons☆13Updated last month
- A curated list of awesome resources, papers, datasets, and tools related to Genomic LLMs. This repository aims to provide a comprehensive…☆16Updated last year
- ☆27Updated 4 months ago
- Comprehensive Python client for the Uniprot REST API☆50Updated last month
- Self-guided educational workshop for ChIP-Seq and RNA-Seq☆14Updated 4 years ago
- ☆33Updated 2 years ago
- Generalizable AI predicts immunotherapy outcomes across cancers and treatments☆37Updated last week
- A collection of useful functions for bioinformatics data analysis☆24Updated 3 weeks ago
- R tool to analyse and integrate multiple -omics data☆13Updated 2 months ago
- Shiny app to easily create publishable plots for scientific papers☆34Updated 5 months ago
- Microarray Analysis Pipeline in Python☆19Updated 6 years ago
- Workflow to download, process, and explore microbial RNA-seq data from NCBI SRA☆17Updated last year
- A python package to explore pathways, diseases and drugs associated to a list of targets (genes, proteins, etc)☆19Updated 8 months ago
- 🧪 🖥 Transparent exploration of machine learning for biomarker discovery from proteomics and omics data☆36Updated last year
- surrogate quantitative interpretability for deepnets☆24Updated last week
- A project - tutorial. Differential expression of RNAseq raw counts data using a Real world dataset in R. Packages covered 'DESeq2' and 'E…☆13Updated 2 years ago
- Deep learning model to predict degron sequences☆20Updated 2 years ago
- DIABLO - an integrative multi-group, multi-dataset classification method☆24Updated 6 years ago
- Arnie-based DegScore tool.☆26Updated 2 years ago
- A pipeline that accurately simulates high quality publicly cancer genomes (VCFs, CNAs and SVs).☆13Updated 2 months ago
- ☆19Updated 4 years ago
- Fully convolutional deep learning variant effect predictor architecture☆23Updated last year