BiomedSciAI / Geno4SDLinks
An python omics data toolkit for the analysis across biological scales
☆11Updated last year
Alternatives and similar repositories for Geno4SD
Users that are interested in Geno4SD are comparing it to the libraries listed below
Sorting:
- a framework for predicting global protein-protein interaction networks from dynamic mass spec data☆24Updated last year
- Python package for analyzing and visualizing iModulons☆13Updated last week
- COSMIS is a framework for quantifying the mutational constraint on amino acid sites in 3D spatial neighborhoods. The framework currently …☆17Updated 2 years ago
- CLUMPS adapted to post-translational modifications.☆9Updated last month
- Interactive tutorials for using scikit-bio in biological research☆25Updated last month
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 3 years ago
- R tool to analyse and integrate multiple -omics data☆12Updated 3 weeks ago
- ☆27Updated 2 months ago
- Detects hotspot regions for somatic mutations in 3D protein structures☆3Updated last year
- ☆33Updated 2 years ago
- Comprehensive Python client for the Uniprot REST API☆50Updated last week
- Deep learning embedding for nucleotide sequences☆18Updated 3 months ago
- ☆21Updated this week
- surrogate quantitative interpretability for deepnets☆23Updated 2 weeks ago
- A collection of useful functions for bioinformatics data analysis☆23Updated 3 weeks ago
- Cancer Suppressor Gene and Oncogene Prediction using Deep Learning (CNN)☆10Updated 7 years ago
- MILTON: Disease prediction with biomarkers and augmented PheWAS analyses☆35Updated 9 months ago
- Arnie-based DegScore tool.☆26Updated 2 years ago
- ☆15Updated 3 weeks ago
- Deep learning model to predict degron sequences☆20Updated 2 years ago
- ViennaRNA Package consists of a C code library for the prediction and comparison of RNA secondary structures☆14Updated 3 years ago
- Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …☆32Updated 3 months ago
- Python package to load and query ARCHS4 data☆23Updated 3 months ago
- Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake☆26Updated 5 months ago
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Updated 2 years ago
- ☆18Updated 11 months ago
- Pipeline for assessing the tractability of potential targets (starting from Gene IDs)☆24Updated 4 months ago
- Code for LazyAF pipeline☆20Updated last year
- A package for making tree-based visualizations for embedding vectors☆9Updated 2 years ago
- Generalizable AI predicts immunotherapy outcomes across cancers and treatments☆36Updated last month