jmzeng1314 / bioinformatics_links

Related projects ⓘ

Alternatives and complementary repositories for bioinformatics_links

• jmzeng1314 / rna-seq-example
  An analysis of Arabidopsis RNA-seq data (hy5 mutant and wt, two replicates each; SRA accession SRX029582)
  ☆14Updated 12 years ago
• jmzeng1314 / ChIP-seq-analysis
  ChIP-seq analysis notes from Tommy Tang
  ☆19Updated 8 years ago
• jmzeng1314 / cnv
  ☆32Updated 6 years ago
• jmzeng1314 / BPscRNAseq
  ☆11Updated 6 years ago
• jmzeng1314 / my-perl
  some short but practical PERL script in NGS data analysis
  ☆17Updated 7 years ago
• jmzeng1314 / myScRNA-seq
  ☆13Updated 7 years ago
• jmzeng1314 / IRseq
  ☆10Updated 7 years ago
• jmzeng1314 / IDmap
  ☆11Updated 5 years ago
• jmzeng1314 / survival
  ☆16Updated 5 years ago
• dgrun / RaceID3_StemID2
  Algorithm for the inference of cell types and lineage trees from single-cell RNA-seq data. Please download the R package from the RaceID3…
  ☆15Updated 5 years ago
• KafsackLab / scRNAseq-Malaria
  Codes associated with the Poran, Nötzel et al. paper titled "Single-cell RNA-seq reveals a signature of sexual commitment in malaria para…
  ☆10Updated 7 years ago
• ay-lab / ATACProc
  ATAC-seq processing pipeline
  ☆31Updated 2 years ago
• markowetzlab / Drews2022_CIN_Compendium
  Main repository for Drews et al. (Nature, 2022)
  ☆38Updated last year
• DavidQuigley / WCDT_WGBS
  West Coast Dream Team Whole Genome Bisulfite Sequencing
  ☆15Updated 4 years ago
• Xiang-HF-Zhang / Dichotomous-of-innate-immune-landscape
  Dichotomous of innate immune landscape
  ☆17Updated 5 years ago
• WRui / Post_Implantation
  ☆27Updated 3 years ago
• shunliubio / easym6A
  Process m6A/MeRIP-seq data in a single or batch job mode
  ☆20Updated 4 years ago
• ShixiangWang / Variants2Neoantigen
  A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)
  ☆29Updated 5 years ago
• kundajelab / ataqc
  ☆17Updated 5 years ago
• jmzeng1314 / TF_map
  ☆12Updated 3 years ago
• marvin-jens / find_circ
  tools to find circRNAs in RNA-seq data
  ☆40Updated 7 years ago
• gxiaolab / REDITs
  RNA editing tests
  ☆16Updated 4 years ago
• Changwuuu / Cuproptosis-pancancer
  ☆18Updated last year
• genome-vendor / bsmap
  Unofficial repo for software vendoring or packaging purposes
  ☆19Updated 7 years ago
• jmzeng1314 / GSE76275-TNBC
  ☆17Updated 4 years ago
• Aufiero / circRNAprofiler
  ☆10Updated 3 weeks ago
• amcpherson / citup
  Clonality inference in multiple tumor samples using phylogeny
  ☆13Updated 7 years ago
• xuzhougeng / RNA-seq-downstream-analysis
  Arabidopsis RNA_-seq downstream analysis shiny app
  ☆31Updated 5 years ago
• jinghuazhao / TWAS-pipeline
  TWAS-pipeline
  ☆21Updated 3 years ago
• shawnzhangyx / cvdc_scripts
  scripts for analyzing the CVDC data.
  ☆17Updated 4 years ago