Alternatives and similar repositories for biomedical-knowledge-mining-book:

Users that are interested in biomedical-knowledge-mining-book are comparing it to the libraries listed below

• OSCA-source / OSCA
  The package wrapping the book, for deployment via the Bioconductor build system.
  ☆83Updated 4 months ago
• noriakis / CBNplot
  Bayesian network plot for the enrichment analysis results
  ☆64Updated 5 months ago
• wjawaid / enrichR
  An R interface to enrichR
  ☆90Updated last month
• YuLab-SMU / GOSemSim
  GO-terms Semantic Similarity Measures
  ☆63Updated 4 months ago
• jokergoo / simplifyEnrichment
  Simplify functional enrichment results
  ☆113Updated 6 months ago
• tidyomics / tidyomics
  Easily install and load packages from the tidyomcis ecosystem
  ☆66Updated last year
• saezlab / cosmosR
  COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…
  ☆59Updated 2 weeks ago
• reimandlab / ActivePathways
  Integrative pathway enrichment analysis of multivariate omics data
  ☆107Updated 7 months ago
• saezlab / transcriptutorial
  This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL
  ☆55Updated last year
• uc-bd2k / GREIN
  GREIN : GEO RNA-seq Experiments Interactive Navigator
  ☆49Updated 5 years ago
• songw01 / MEGENA
  Multiscale embedded gene co-expression network analysis
  ☆51Updated last year
• cmap / cmapR
  Tools for manipulating annotated data matrices
  ☆90Updated 3 years ago
• GangLiLab / genekitr
  🧬 Gene analysis toolkit based on R
  ☆56Updated 2 months ago
• MangiolaLaboratory / sccomp
  Mixed-effect model to test differences in cell type proportions from single-cell data, in R
  ☆99Updated last week
• hbctraining / DGE_workshop_salmon
  ☆71Updated 3 years ago
• GabrielHoffman / variancePartition
  Quantify and interpret divers of variation in multilevel gene expression experiments
  ☆62Updated 2 months ago
• kevinblighe / E-MTAB-6141
  Data from Lewis, Barnes, Blighe et al., Cell Rep. 2019 Aug 27; 28(9): 2455–2470.e5.
  ☆119Updated 4 years ago
• saezlab / OmnipathR
  R client for the OmniPath web service
  ☆130Updated last month
• kevinblighe / scDataviz
  scDataviz: single cell dataviz and downstream analyses
  ☆63Updated 3 years ago
• crazyhottommy / papers_with_data_to_mine
  published papers with a lot of data
  ☆66Updated last month
• immunitastx / coding_exercise_TCGA_infiltration
  coding exercise using TCGA immune infiltration data
  ☆44Updated last year
• YuLab-SMU / createKEGGdb
  Create KEGG.db Package
  ☆60Updated 2 years ago
• BaderLab / Cytoscape_workflows
  collection of notebooks with different cytoscape workflows
  ☆49Updated 2 years ago
• tidymass / tidymass
  tidymass
  ☆54Updated last year
• saezlab / dorothea
  R package to access DoRothEA's regulons
  ☆143Updated last year
• crazyhottommy / compbio_tutorials
  My youtube programming scripts
  ☆51Updated 2 months ago
• MRCIEU / metaboprep
  a pipeline of metabolomics data processing and quality control
  ☆25Updated last year
• YuLab-SMU / DOSE
  Disease Ontology Semantic and Enrichment analysis
  ☆119Updated this week
• mikegloudemans / gwas-download
  Easily download publicly available GWAS summary statistics.
  ☆75Updated last year
• jasonHKU0907 / proteome-phenome-atlas
  ☆48Updated last month