YuLab-SMU / biomedical-knowledge-mining-book
Biomedical knowledge mining using GOSemSim and clusterProfiler
☆69Updated last year
Related projects: ⓘ
- An R interface to enrichR☆76Updated 5 months ago
- Multiscale embedded gene co-expression network analysis☆48Updated 8 months ago
- GREIN : GEO RNA-seq Experiments Interactive Navigator☆48Updated 5 years ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆55Updated last year
- Cell-Centric View of Tissue Transcriptome Measuring Cellular Compositions of Immune Microenvironment From Mouse RNA-Seq Data.☆22Updated 2 years ago
- Bayesian network plot for the enrichment analysis results☆56Updated 5 months ago
- Simplify functional enrichment results☆106Updated last week
- R package for High dimensional data analysis and integration with O2PLS!☆31Updated 2 years ago
- Easily install and load packages from the tidyomcis ecosystem☆60Updated 6 months ago
- Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.☆72Updated last year
- published papers with a lot of data☆61Updated 4 months ago
- Integrative pathway enrichment analysis of multivariate omics data☆98Updated last month
- ☆55Updated 4 years ago
- The package wrapping the book, for deployment via the Bioconductor build system.☆76Updated last year
- ☆67Updated 2 years ago
- Summer School 2019 - Functional Genomics☆20Updated 5 years ago
- Easily download publicly available GWAS summary statistics.☆72Updated 9 months ago
- Content for the OSCA Book.☆65Updated last year
- collection of notebooks with different cytoscape workflows☆47Updated last year
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆56Updated last month
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆90Updated last month
- Testing differences in cell type proportions from single-cell data.☆90Updated this week
- Tools for manipulating annotated data matrices☆84Updated 2 years ago
- R package to access DoRothEA's regulons☆132Updated 6 months ago
- Immunology-related bioinformatics data and tools☆67Updated 4 months ago
- Explore and download data from the recount3 project☆31Updated 4 months ago
- scDataviz: single cell dataviz and downstream analyses☆60Updated 2 years ago
- R data package for pre-compiled somatic mutations from TCGA cohorts (from Broad Firehose and TCGA MC3 Project)☆83Updated 7 months ago
- R package for the analysis of single-cell immune repertoires☆39Updated 3 weeks ago
- ☆69Updated 8 months ago
- Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets☆109Updated 3 weeks ago