Alternatives and similar repositories for biomedical-knowledge-mining-book

Users that are interested in biomedical-knowledge-mining-book are comparing it to the libraries listed below

• tidymass / tidymass
  tidymass
  ☆59Updated 3 months ago
• YuLab-SMU / GOSemSim
  GO-terms Semantic Similarity Measures
  ☆66Updated last week
• YuLab-SMU / DOSE
  Disease Ontology Semantic and Enrichment analysis
  ☆123Updated last week
• saezlab / cosmosR
  COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…
  ☆64Updated last month
• cmap / cmapR
  Tools for manipulating annotated data matrices
  ☆92Updated 4 years ago
• uc-bd2k / GREIN
  GREIN : GEO RNA-seq Experiments Interactive Navigator
  ☆50Updated 6 years ago
• noriakis / CBNplot
  Bayesian network plot for the enrichment analysis results
  ☆66Updated last year
• crazyhottommy / papers_with_data_to_mine
  published papers with a lot of data
  ☆74Updated 9 months ago
• Bioconductor / OrchestratingSingleCellAnalysis
  Content for the OSCA Book.
  ☆66Updated 2 years ago
• openbiox / UCSCXenaShiny
  📊 An R package for interactively exploring UCSC Xena https://xenabrowser.net/datapages/; Book: https://lishensuo.github.io/UCSCXenaShiny…
  ☆104Updated 4 months ago
• jeffsocal / tidyproteomics
  An S3 data object and framework for common quantitative proteomic analyses
  ☆47Updated last month
• selbouhaddani / OmicsPLS
  R package for High dimensional data analysis and integration with O2PLS!
  ☆35Updated 6 months ago
• tidyomics / tidyomics
  Easily install and load packages from the tidyomics ecosystem
  ☆74Updated 2 months ago
• bartongroup / Proteus
  R package for analysing proteomics data
  ☆50Updated 2 years ago
• NBISweden / workshop_omics_integration
  Workshop in omics integration and systems biology
  ☆85Updated last year
• wjawaid / enrichR
  An R interface to enrichR
  ☆93Updated 11 months ago
• PoisonAlien / TCGAmutations
  R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE
  ☆98Updated last year
• ropensci / UCSCXenaTools
  An R package for accessing genomics data from UCSC Xena platform, from cancer multi-omics to single-cell RNA-seq https://cran.r-project.…
  ☆111Updated 3 months ago
• GangLiLab / genekitr
  🧬 Gene analysis toolkit based on R
  ☆61Updated last year
• jokergoo / simplifyEnrichment
  Simplify functional enrichment results
  ☆121Updated last year
• saezlab / OmnipathR
  R client for the OmniPath web service
  ☆151Updated this week
• ktrns / scrnaseq
  Workflow for single-cell RNA-seq analysis using Seurat
  ☆47Updated 2 years ago
• Lindsey-LCFoong / WGCNA_tutorial
  A step-by-step tutorial for Weighted correlation network analysis (WGCNA)
  ☆72Updated 3 years ago
• YuLab-SMU / meshes
  MeSH Enrichment and Semantic analyses
  ☆12Updated 3 weeks ago
• crazyhottommy / compbio_tutorials
  My youtube programming scripts
  ☆59Updated last year
• bhklab / PharmacoGx
  R package to analyze large-scale pharmacogenomic datasets.
  ☆71Updated 3 months ago
• wenbostar / metaX
  metaX: a flexible and comprehensive software for processing omics data.
  ☆26Updated 2 years ago
• AlexsLemonade / training-modules
  A collection of modules that are combined into 1-5 day workshops on computational topics for the childhood cancer research community.
  ☆71Updated last month
• GSEA-MSigDB / GSEA_R
  Updated implementation of the GSEA-P R application for modern R distributions
  ☆99Updated 4 years ago
• federicomarini / awesome-expression-browser
  😎 A curated list of software and resources for exploring and visualizing (browsing) expression data 😎
  ☆142Updated 2 months ago