scBSP is a specialized package designed for processing biological data, specifically in the analysis of gene expression and cell coordinates. It efficiently computes p-values for a given set of genes based on input matrices representing cell coordinates and gene expression data.
☆22Feb 3, 2026Updated last month
Alternatives and similar repositories for scBSP
Users that are interested in scBSP are comparing it to the libraries listed below
Sorting:
- ☆21Sep 2, 2025Updated 6 months ago
- The first multimodal QA dataset specifically designed for evaluating large TCM language models.☆21Oct 24, 2025Updated 4 months ago
- This is the official repository of Prot2Token paper.☆38Jun 6, 2025Updated 9 months ago
- S-PLM: Structure-aware Protein Language Model via Contrastive Learning between Sequence and Structure☆74Dec 23, 2025Updated 2 months ago
- ☆12Nov 26, 2023Updated 2 years ago
- This repository contains the stand-alone tool for MusiteDeep server☆35Dec 5, 2020Updated 5 years ago
- DeepDom is an ab-initio method for protein domain boundary prediction☆16Sep 5, 2022Updated 3 years ago
- The project implementation of the paper "A Non-Invasive Interpretable NAFLD Diagnostic Method Combining TCM Tongue Diagnosis".☆12Dec 18, 2024Updated last year
- Compute strain abundance in a defined microbial community☆10Jul 27, 2023Updated 2 years ago
- PaNeV: an R package for a pathway-based network visualization☆10Aug 25, 2025Updated 6 months ago
- A loose collections of functions to prepare plots in R☆11Nov 17, 2017Updated 8 years ago
- COmpositional Zero-Inflated Network Estimation☆11Nov 20, 2023Updated 2 years ago
- A pipeline for extracting SSU rRNA gene from wgs data and applying them for further diversity analysis☆10Jan 30, 2016Updated 10 years ago
- A simple application to build Trip-lets☆10Mar 30, 2020Updated 5 years ago
- de Bruijn Workflow using Integral information of Short pair End reads☆13Aug 21, 2024Updated last year
- An implementation of a Capsule Attention Network.☆10Jan 26, 2018Updated 8 years ago
- scGNN (single cell graph neural networks) for single cell clustering and imputation using graph neural networks☆11Aug 4, 2020Updated 5 years ago
- A workflow of tidyverse(glm -> broom -> ggplot)☆11May 11, 2017Updated 8 years ago
- convert a blast output to a bed file☆12Jun 19, 2015Updated 10 years ago
- accessory functions for processing microbial community data☆12Dec 24, 2022Updated 3 years ago
- GPT-based protein language model for PTM site prediction☆19Aug 11, 2024Updated last year
- ☆12Apr 9, 2018Updated 7 years ago
- 基于深度学习的英文文本分类☆11Mar 19, 2021Updated 4 years ago
- Computational framework to identify promoter sequences from RNA-seq datasets☆11Sep 27, 2023Updated 2 years ago
- mbImpute: an accurate and robust imputation method for microbiome data☆11Aug 19, 2021Updated 4 years ago
- R package for anthropometric growth standard calculations☆14Jul 21, 2025Updated 7 months ago
- t-distributed stochastic neighbor embedding for microbiota data☆12May 12, 2019Updated 6 years ago
- ☆49Updated this week
- integrative pathway analysis with modern PCA methodology and gene selection☆11Jun 29, 2023Updated 2 years ago
- ☆12Nov 5, 2023Updated 2 years ago
- MusiteDeep provides a deep-learning method for general and kinase-specific phosphorylation site prediction. It is implemented by deep lea…☆49Aug 5, 2025Updated 7 months ago
- Code in Clustering Review Ronan et al. 2016☆13Mar 10, 2016Updated 9 years ago
- R/Shiny application for viewing microbial community data☆19Dec 17, 2020Updated 5 years ago
- Finding surprising needles (=features) in haystacks (=single cell/spatial genomics data).☆13Jan 12, 2024Updated 2 years ago
- 2025 RAD microbes boot camp☆15Apr 30, 2025Updated 10 months ago
- Programs and documentation for the SAMSA pipeline, version 1.0☆16Dec 16, 2019Updated 6 years ago
- Simple counting of bacterial colonies from pictures of plates.☆15Mar 5, 2021Updated 5 years ago
- Biology-centered data-driven quality control for scRNA-seq☆19May 22, 2023Updated 2 years ago
- k-mer probability logo☆11Jan 20, 2023Updated 3 years ago