scBSP is a specialized package designed for processing biological data, specifically in the analysis of gene expression and cell coordinates. It efficiently computes p-values for a given set of genes based on input matrices representing cell coordinates and gene expression data.
☆22Mar 22, 2026Updated this week
Alternatives and similar repositories for scBSP
Users that are interested in scBSP are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆21Sep 2, 2025Updated 6 months ago
- official repo for scPEFT☆51Jan 14, 2026Updated 2 months ago
- This is the official repository of Prot2Token paper.☆38Jun 6, 2025Updated 9 months ago
- S-PLM: Structure-aware Protein Language Model via Contrastive Learning between Sequence and Structure☆74Dec 23, 2025Updated 3 months ago
- This is the official repository of GCP-VQVAE: A Geometry-Complete Language for Protein 3D Structure☆40Feb 13, 2026Updated last month
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- ☆12Nov 26, 2023Updated 2 years ago
- DeepDom is an ab-initio method for protein domain boundary prediction☆16Sep 5, 2022Updated 3 years ago
- A deep-learning framework for characterizing and visualizing tissue architecture from spatially resolved transcriptomics☆14Sep 13, 2022Updated 3 years ago
- An implementation of a Capsule Attention Network.☆10Jan 26, 2018Updated 8 years ago
- scGNN (single cell graph neural networks) for single cell clustering and imputation using graph neural networks☆11Aug 4, 2020Updated 5 years ago
- GPT-based protein language model for PTM site prediction☆19Aug 11, 2024Updated last year
- MusiteDeep provides a deep-learning method for general and kinase-specific phosphorylation site prediction. It is implemented by deep lea…☆49Aug 5, 2025Updated 7 months ago
- A program fror inter-protein contact prediction from structures of interacting proteins☆21Jun 1, 2024Updated last year
- A simple application to build Trip-lets☆10Mar 30, 2020Updated 5 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Implementation of Bidirectional Recurrent Independent Mechanisms (Learning to Combine Top-Down and Bottom-Up Signals in Recurrent Neural …☆28Nov 11, 2020Updated 5 years ago
- Compute strain abundance in a defined microbial community☆10Jul 27, 2023Updated 2 years ago
- SQL on CSV files in the shell☆15Apr 6, 2018Updated 7 years ago
- Finding surprising needles (=features) in haystacks (=single cell/spatial genomics data).☆13Jan 12, 2024Updated 2 years ago
- ☆22Oct 11, 2021Updated 4 years ago
- PaNeV: an R package for a pathway-based network visualization☆10Aug 25, 2025Updated 7 months ago
- A loose collections of functions to prepare plots in R☆11Nov 17, 2017Updated 8 years ago
- Matlab implementation of the Elastic Principal Graphs (ElPiGraph) method☆14Dec 6, 2022Updated 3 years ago
- AlignerBoost is a generalized software toolkit for boosting Next-Gen sequencing mapping precision using a Bayesian based mapping quality …☆11Mar 1, 2022Updated 4 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Biology-centered data-driven quality control for scRNA-seq☆19May 22, 2023Updated 2 years ago
- CapsNet for Protein Post-translational Modification site prediction.☆25Nov 20, 2019Updated 6 years ago
- ☆49Mar 12, 2026Updated 2 weeks ago
- accessory functions for processing microbial community data☆12Dec 24, 2022Updated 3 years ago
- integrative pathway analysis with modern PCA methodology and gene selection☆11Jun 29, 2023Updated 2 years ago
- convert a blast output to a bed file☆12Jun 19, 2015Updated 10 years ago
- t-distributed stochastic neighbor embedding for microbiota data☆12May 12, 2019Updated 6 years ago
- ☆21Oct 22, 2024Updated last year
- R/Shiny application for viewing microbial community data☆19Dec 17, 2020Updated 5 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Statistical Inference for Unsupervised Learning☆17Feb 26, 2026Updated last month
- A workflow of tidyverse(glm -> broom -> ggplot)☆11May 11, 2017Updated 8 years ago
- Prediction of binding residues for metal ions, nucleic acids, and small molecules.☆36Sep 2, 2025Updated 6 months ago
- ☆15Dec 8, 2022Updated 3 years ago
- de Bruijn Workflow using Integral information of Short pair End reads☆13Aug 21, 2024Updated last year
- A benchmark for comprehensive evaluation on protein structure tokenization methods☆46Aug 2, 2025Updated 7 months ago
- Run AlphaFold2 (and multimer) step by step☆39Apr 23, 2022Updated 3 years ago