☆22Sep 2, 2025Updated 11 months ago
Alternatives and similar repositories for scBSP
Users that are interested in scBSP are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- scBSP is a specialized package designed for processing biological data, specifically in the analysis of gene expression and cell coordina…☆22Jul 23, 2026Updated 2 weeks ago
- The first multimodal QA dataset specifically designed for evaluating large TCM language models.☆23Oct 24, 2025Updated 9 months ago
- official repo for scPEFT☆53Jan 14, 2026Updated 6 months ago
- This is the official repository of Prot2Token paper.☆38Jun 6, 2025Updated last year
- This is the official repository of GCP-VQVAE: A Geometry-Complete Language for Protein 3D Structure☆43May 9, 2026Updated 3 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- This repository contains the stand-alone tool for MusiteDeep server☆36Dec 5, 2020Updated 5 years ago
- DeepDom is an ab-initio method for protein domain boundary prediction☆16Sep 5, 2022Updated 3 years ago
- This study explored prompt-based learning to adapt the state-of-the-art image segmentation foundation model SAM for cryo-EM. Through tria…☆13Apr 27, 2025Updated last year
- Weighted gene co-expression network analysis for scRNA-seq data in Seurat☆10Dec 15, 2023Updated 2 years ago
- A deep-learning framework for characterizing and visualizing tissue architecture from spatially resolved transcriptomics☆14Sep 13, 2022Updated 3 years ago
- A Python 3 script for cleaning up the PDB file☆11Dec 20, 2017Updated 8 years ago
- An implementation of a Capsule Attention Network.☆10Jan 26, 2018Updated 8 years ago
- Namespace encoding hierarchical relationships between proteins, protein families, and protein complexes.☆12Mar 9, 2021Updated 5 years ago
- scGNN (single cell graph neural networks) for single cell clustering and imputation using graph neural networks☆10Aug 4, 2020Updated 6 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- public production version of sequin to share with the public☆11Jun 12, 2026Updated last month
- MusiteDeep provides a deep-learning method for general and kinase-specific phosphorylation site prediction. It is implemented by deep lea…☆50Aug 5, 2025Updated last year
- R package for metabolic enzyme enrichment anaylsis☆14Oct 24, 2025Updated 9 months ago
- [WSDM'24 Oral] The official implementation of paper <DeSCo: Towards Generalizable and Scalable Deep Subgraph Counting>☆24Mar 11, 2024Updated 2 years ago
- ☆14Feb 19, 2024Updated 2 years ago
- ☆12Mar 22, 2023Updated 3 years ago
- A program fror inter-protein contact prediction from structures of interacting proteins☆21Jun 1, 2024Updated 2 years ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆28Jul 13, 2026Updated 3 weeks ago
- GPT-based protein language model for PTM site prediction☆19Aug 11, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- An R package for ECM molecule annotation, classification, and analysis☆14Sep 20, 2024Updated last year
- Code accompanying the manuscript "Tissue Schematics map the specialization of immune tissue motifs and their appropriation by tumors"☆13Mar 3, 2023Updated 3 years ago
- Modular pipeline for integrated analysis of the tumour microenvironment using multiplex imaging☆14Jul 29, 2025Updated last year
- Bayesian optimization of discrete sequences☆22Mar 27, 2022Updated 4 years ago
- Analysis scripts for snMultiome project☆16Dec 12, 2024Updated last year
- Projecting RNA measurements onto single cell atlases to extract cell type-specific expression profiles using scProjection☆16Aug 28, 2023Updated 2 years ago
- Implementation of Bidirectional Recurrent Independent Mechanisms (Learning to Combine Top-Down and Bottom-Up Signals in Recurrent Neural …☆28Nov 11, 2020Updated 5 years ago
- R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in c…☆17Sep 26, 2021Updated 4 years ago
- pycistarget is a python module to perform motif enrichment analysis in sets of regions with different tools and identify high confidence …☆20Apr 14, 2026Updated 3 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Interactive applications of stlearn☆16May 1, 2023Updated 3 years ago
- A toolset to analyze genomic footprinting data☆20Jul 28, 2026Updated 2 weeks ago
- Selecting the optimal trajectory inference based on a given dataset and user input 🔮☆19Jun 29, 2020Updated 6 years ago
- Detection of differential translated genes using Ribo-seq☆17Apr 10, 2021Updated 5 years ago
- ☆54Dec 3, 2023Updated 2 years ago
- FeatureMAP (Feature-preserving Manifold Approximation and Projection) is an interpratable dimensionality reduction tool.☆20Jul 12, 2026Updated 3 weeks ago
- Detect hierarchical structures in cell-cell communications☆16Jan 26, 2025Updated last year