Rostlab / ProNA2020Links
ProNA2020: System predicting protein-DNA, protein-RNA and protein-protein binding sites from sequence
☆14Updated 5 years ago
Alternatives and similar repositories for ProNA2020
Users that are interested in ProNA2020 are comparing it to the libraries listed below
Sorting:
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆72Updated 2 years ago
- ☆78Updated 2 years ago
- HLA-I ligand predictor☆43Updated 9 months ago
- Multi-class signal peptide prediction and structure decoding model.☆94Updated 7 months ago
- Python package and command line tool for epitope prediction☆52Updated last year
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆73Updated last month
- HLA-II ligand predictor.☆44Updated 2 years ago
- Code for 5UTR project☆25Updated 2 years ago
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆56Updated last year
- Absolve antibody variable domain sequence analysis☆18Updated 7 years ago
- Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.☆41Updated last year
- python tools for TCR:peptide-MHC modeling and analysis☆82Updated last year
- Mutation effects predicted from sequence co-variation☆69Updated 8 years ago
- Feature map and function annotation of Proteins☆33Updated last year
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆40Updated last week
- STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint T…☆28Updated 4 months ago
- Comprehensive Python client for the Uniprot REST API☆50Updated 3 months ago
- ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…☆19Updated 2 years ago
- CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.☆40Updated last year
- Immunoglobulin and T-Cell receptor rearrangement software☆50Updated last year
- Conservation analysis of homologous proteins with Python☆12Updated 4 years ago
- Evolutionary velocity with protein language models☆94Updated last year
- A visualization software for antibody multi sequence alignment☆20Updated last year
- An R package to calculate indices and theoretical physicochemical properties of peptides and protein sequences.☆90Updated last year
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆31Updated 2 years ago
- NetTCR-2.0. Sequence-based prediction of peptide-TCR binding☆35Updated 3 years ago
- Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval☆119Updated last year
- An error model and pipeline for analyzing deep mutational scanning (DMS) data and diagnosing common experimental pathologies☆35Updated this week
- Promoter activity measurement and modeling; artificial promoter design and testing☆13Updated 2 years ago
- Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.☆51Updated 6 years ago