Rostlab / ProNA2020Links
ProNA2020: System predicting protein-DNA, protein-RNA and protein-protein binding sites from sequence
☆14Updated 5 years ago
Alternatives and similar repositories for ProNA2020
Users that are interested in ProNA2020 are comparing it to the libraries listed below
Sorting:
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆74Updated 2 years ago
- Multi-class signal peptide prediction and structure decoding model.☆102Updated 11 months ago
- Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.☆44Updated last year
- ☆85Updated 2 years ago
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆58Updated 3 weeks ago
- HLA-I ligand predictor☆43Updated 3 months ago
- Feature map and function annotation of Proteins☆34Updated last year
- VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.☆44Updated 3 weeks ago
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆77Updated last month
- Python package and command line tool for epitope prediction☆52Updated last year
- Comprehensive Python client for the Uniprot REST API☆54Updated 3 months ago
- HLA-II ligand predictor.☆45Updated 2 years ago
- Code for 5UTR project☆25Updated 2 years ago
- Absolve antibody variable domain sequence analysis☆18Updated 7 years ago
- CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.☆42Updated last year
- Python package for investigating the structural context of PTMs☆28Updated 11 months ago
- An R package to calculate indices and theoretical physicochemical properties of peptides and protein sequences.☆94Updated last year
- ☆97Updated 6 months ago
- Evolutionary conservation estimation of residues or nucleotides☆56Updated 3 years ago
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆31Updated 2 years ago
- Automatic oligonucleotide design for PCR-based gene synthesis☆50Updated last month
- Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval☆121Updated last year
- A visualization software for antibody multi sequence alignment☆22Updated last year
- Evolutionary velocity with protein language models☆95Updated last month
- ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…☆20Updated 3 years ago
- Scripts for "Determining protein structures using deep mutagenesis", Schmiedel & Lehner, Nature Genetics, 2019☆19Updated 6 years ago
- python tools for TCR:peptide-MHC modeling and analysis☆84Updated last year
- iLearnPlus is the first machine-learning platform with both graphical- and web-based user interface that enables the construction of auto…☆121Updated last year
- Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor☆50Updated last year
- Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.☆55Updated 6 years ago