ProNA2020: System predicting protein-DNA, protein-RNA and protein-protein binding sites from sequence
☆14Aug 7, 2020Updated 6 years ago
Alternatives and similar repositories for ProNA2020
Users that are interested in ProNA2020 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- End-to-end deep learning toolkit for predicting protein binding sites and motifs.☆45Feb 26, 2019Updated 7 years ago
- BioSeq-BLM: a platform for analyzing DNA, RNA and protein sequences based on biological language models☆14Aug 21, 2022Updated 4 years ago
- Direct coupling analysis software for protein and RNA sequences☆62Jul 21, 2025Updated last year
- 🧬 Toolkit for generating various numerical features of protein sequences☆53Aug 25, 2025Updated last year
- Convert raw AAIndex data into Python-friendly, ready-to-use dataframes☆11Mar 19, 2020Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆10Jan 12, 2022Updated 4 years ago
- Cyclic-peptide - protein complexes benchmark and associated scripts and data☆16Aug 31, 2024Updated 2 years ago
- GraphProt: modelling binding preferences of RNA-binding proteins☆21Jul 19, 2018Updated 8 years ago
- iLearn, a Python Toolkit and Web Server Integrating the Functionality of Feature Calculation, Extraction, Clustering, Feature Selection, …☆85Jul 20, 2022Updated 4 years ago
- Python package simulating artificial selection on microbial communities☆15Aug 15, 2023Updated 3 years ago
- Python package for protein sequence-based bidirectional recurrent neural network. Generalizable to a variety of protein bioinformatic app…☆22Oct 26, 2026Updated last week
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Jul 31, 2023Updated 3 years ago
- Robust, tested workflows for RNA-seq, ChIP-seq and other high-throughput sequencing analysis☆24Updated this week
- Scripts for finding restriction-modification systems in bacterial genomes.☆11Nov 9, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Tool intended to pull out sequences and annotations between insertion sites specified by the user.☆15Apr 10, 2026Updated 6 months ago
- Data Analysis For FLAM-Seq Third Generation RNA Sequencing☆10Jan 22, 2022Updated 4 years ago
- A Clojure library for deconstructing Korean unicode syllable characters into alphabet characters☆10Nov 22, 2021Updated 4 years ago
- K-mer counting algorithms and count-data utilities for the BioJulia framework☆11Apr 23, 2023Updated 3 years ago
- An ImageJ plugin to quantify ciliary shape, length, and fluorescence.☆10Updated this week
- GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures☆63Aug 3, 2024Updated 2 years ago
- Context and recommendations for using Claude code for bioinformatics☆16Jun 24, 2025Updated last year
- UKRIN Kidney Analysis Toolbox☆14Updated this week
- HELM2NotationToolkit is the reference implementation of the new HELM 2 standard with support for ambiguous structures.☆12May 24, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- drawing RNA secondary structure with style; instantly☆10Nov 22, 2025Updated 11 months ago
- 🧮 🔢 Generate multi-sample k-mer count matrix from WGS☆11Jan 17, 2026Updated 9 months ago
- Magic gene-neighborhood analyses☆15Oct 6, 2026Updated last month
- How to Become a Data Scientist☆16Mar 3, 2016Updated 10 years ago
- docking visualization with py3dmol and streamlit☆25Mar 15, 2021Updated 5 years ago
- Genomic Islands From Roary Pangenomes☆10Jul 16, 2021Updated 5 years ago
- ☆10Feb 2, 2024Updated 2 years ago
- Alignment-free Protein Motif Miner☆15Nov 8, 2018Updated 7 years ago
- Code, scripts, some logs and general misc. from to the RNA viruses in MetaTranscriptome discovery project.☆12Jan 5, 2023Updated 3 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Microbiome Classifier Pipeline for Pacific Biosciences 16s Data☆11Jan 22, 2024Updated 2 years ago
- a tool for assigning species to Klebsiella assemblies☆11Apr 14, 2022Updated 4 years ago
- Community stuff – currently including release notes, but more coming soon.☆17Apr 14, 2023Updated 3 years ago
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆13Mar 12, 2024Updated 2 years ago
- Using RNA-Seq data to improve microRNA target prediction accuracy in animals☆11Feb 15, 2026Updated 8 months ago
- Automated pipeline for whole bacterial genome analysis based on snakemake☆12May 16, 2022Updated 4 years ago
- A microbial genomic analysis pipeline used by the Djordjevic Lab☆14Feb 9, 2025Updated last year