Alternatives and similar repositories for scPEFT

Users that are interested in scPEFT are comparing it to the libraries listed below

• duolinwang / S-PLM
  S-PLM: Structure-aware Protein Language Model via Contrastive Learning between Sequence and Structure
  ☆69Updated last month
• TencentAI4S / tfold
  open source code for Tencent tFold
  ☆106Updated 5 months ago
• pengxingang / TEIM
  TEIM: TCR-Epitope Interaction Modeling
  ☆50Updated 2 years ago
• CatIIIIIIII / RNAErnie
  Official implement of paper "Multi-purpose RNA Language Modeling with Motif-aware Pre-training and Type-guided Fine-tuning"
  ☆48Updated 10 months ago
• ai4protein / ProSST
  🧬 Advanced hybrid language model for directed protein evolution. (NeurIPS 2024)
  ☆130Updated 2 months ago
• hugohrban / ProGen2-finetuning
  Finetuning ProGen2 protein language model for generation of protein sequences from selected protein families.
  ☆69Updated 6 months ago
• oxpig / ImmuneBuilder
  Predict the structure of immune receptor proteins
  ☆150Updated 6 months ago
• genbio-ai / ModelGenerator
  AIDO.ModelGenerator is a software stack powering the development of an AI-driven Digital Organism (AIDO) by enabling researchers to adapt…
  ☆89Updated 2 weeks ago
• LPDI-EPFL / masif_seed
  Masif seed paper repository
  ☆156Updated 2 years ago
• twopin / CAMP
  predicting peptide-protein interactions
  ☆132Updated last year
• prihoda / AbNumber
  Convenience Python APIs for antibody numbering using ANARCI
  ☆103Updated 2 months ago
• samsledje / D-SCRIPT
  A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions
  ☆100Updated 3 weeks ago
• ml4bio / RhoFold
  Nature Methods: RhoFold+, Accurate RNA 3D structure prediction using a language model-based deep learning approach
  ☆172Updated 2 months ago
• varun-shanker / structural-evolution
  ☆112Updated last year
• ml4bio / RNA-FM
  Nature Methods: RNA foundation model (together with RhoFold)
  ☆291Updated 2 months ago
• yikunpku / RNA-MSM
  Nucleic Acids Research 2024：RNA-MSM model is an unsupervised RNA language model based on multiple sequences that outputs both embedding a…
  ☆65Updated last year
• lbcb-sci / RiNALMo
  RiboNucleic Acid (RNA) Language Model
  ☆117Updated 2 months ago
• Merck / BioPhi
  BioPhi is an open-source antibody design platform. It features methods for automated antibody humanization (Sapiens), humanness evaluatio…
  ☆198Updated 3 months ago
• RosettaCommons / RFantibody
  ☆259Updated 4 months ago
• a96123155 / UTR-LM
  ☆90Updated 10 months ago
• ciceklab / UTRGAN
  Learning to Generate UTR Sequences for Optimized Ribosome Load and Gene Expression
  ☆20Updated 3 months ago
• patrickbryant1 / EvoBind
  In silico directed evolution of peptide binders with AlphaFold
  ☆223Updated 3 weeks ago
• bm2-lab / PanPep
  ☆49Updated last year
• RosettaCommons / protein_generator
  Joint sequence and structure generation with RoseTTAFold sequence space diffusion
  ☆316Updated 9 months ago
• mahdip72 / prot2token
  This is the official repository of Prot2Token paper.
  ☆38Updated 2 months ago
• brianhie / efficient-evolution
  Efficient evolution from protein language models
  ☆212Updated last year
• Graylab / IgLM
  Generative Language Modeling for Antibody Design
  ☆159Updated 10 months ago
• alchemab / antiberta
  Public repository describing training and testing of AntiBERTa.
  ☆60Updated 2 years ago
• programmablebio / ptm-mamba
  ☆77Updated 2 months ago
• Zuricho / ProteinDesignLabs
  List of computational protein design research labs
  ☆188Updated 6 months ago