Convert .gbk or .embl to .gff (and optionally .fa) (required for QUAST)
☆17Jun 19, 2014Updated 12 years ago
Alternatives and similar repositories for to-gff
Users that are interested in to-gff are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Automatically calculate phylogenetic trees from bacterial core genes☆21May 28, 2026Updated 5 months ago
- RILseq computational protocol☆10Apr 3, 2022Updated 4 years ago
- Efficient target prediction incorporating accessibility of interaction sites☆60Updated this week
- A draft genome scaffolder that uses multiple reference genomes in a graph-based approach.☆47Feb 17, 2021Updated 5 years ago
- ☆15May 16, 2019Updated 7 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Build an index for your BAM Index (BAI)☆17Apr 14, 2015Updated 11 years ago
- A computational framework for tetrad-based genotyping & recombination landscape analysis☆11Feb 18, 2025Updated last year
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆33Jan 11, 2024Updated 2 years ago
- Needleman-Wunsch Algorithm for global alignment and local alignment☆12Feb 12, 2020Updated 6 years ago
- 🍶 Genome assembly with short sequence reads☆28Sep 14, 2026Updated last month
- A Simulator for Bacterial Machine learning and Genome-Wide Association Studies☆22Jul 21, 2021Updated 5 years ago
- Convert GFF file to GenBank file format while extracting the sequences between the annotated regions☆15Sep 6, 2023Updated 3 years ago
- ☆10Feb 2, 2022Updated 4 years ago
- IS mapping software☆59Dec 3, 2021Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Analisi dati del COVID 19 in Italia☆11Apr 24, 2020Updated 6 years ago
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆21Feb 15, 2019Updated 7 years ago
- the toolbox for Microbial and personalized GEM, REactiobiome and community NEtwork modelling☆11Feb 3, 2024Updated 2 years ago
- A cookiecutter template that reflects my favored structure for setting up Snakemake-based analysis pipelines.☆16Jul 25, 2016Updated 10 years ago
- Experiments for "Scaling read aligners to hundreds of threads on general-purpose processors"☆11Jun 8, 2018Updated 8 years ago
- Mapping-free variant caller for short-read Illumina data☆21Apr 2, 2020Updated 6 years ago
- ☆11Sep 16, 2020Updated 6 years ago
- Draw pan- and core-genome curves from proteinortho output☆14Oct 26, 2023Updated 3 years ago
- Analysis for svaseq paper☆20Aug 20, 2014Updated 12 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Processing pipeline for pan-genome visulization and exploration☆147Oct 9, 2023Updated 3 years ago
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆13Mar 12, 2024Updated 2 years ago
- ☆11Jan 7, 2020Updated 6 years ago
- Programs used in the lab for various tasks☆14Jul 3, 2026Updated 4 months ago
- A snakemake workflow for benchmarking variant calling approaches with Genome in a Bottle (GIAB), CHM (syndip) or other custom datasets☆13Nov 1, 2026Updated last week
- Genome scale metabolic models in SBML format☆11Nov 16, 2021Updated 4 years ago
- A simple program for evaluate the assembly of a give genome.☆18Mar 3, 2023Updated 3 years ago
- Command line interface and Python client library for the One Codex API☆25Oct 30, 2026Updated last week
- The NanoPipe pipeline analyzes reads generated by the Oxford Nanopore sequencing devices. As a result, it provides alignments to any targ…☆18Dec 21, 2018Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Calculates both scaffold and contig statistics (N50, L50, etc.) from a scaffold FASTA file.☆15Sep 29, 2020Updated 6 years ago
- A collection of tools to work with Illumina's basespace☆13Apr 10, 2019Updated 7 years ago
- Microsoft Azure HPC & Big Compute☆15Aug 18, 2019Updated 7 years ago
- A methodology to rapidly leverage whole genome sequencing of bacterial isolates for clinical identification.☆36Oct 6, 2026Updated last month
- Basic Tools for the Analysis of Disease Outbreaks☆12Oct 24, 2019Updated 7 years ago
- ☆34Dec 20, 2023Updated 2 years ago
- Python package for creating, calibrating and simulating RBA models☆15Aug 19, 2026Updated 2 months ago