Convert .gbk or .embl to .gff (and optionally .fa) (required for QUAST)
☆17Jun 19, 2014Updated 12 years ago
Alternatives and similar repositories for to-gff
Users that are interested in to-gff are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Automatically calculate phylogenetic trees from bacterial core genes☆20May 28, 2026Updated last month
- RILseq computational protocol☆11Apr 3, 2022Updated 4 years ago
- Build an index for your BAM Index (BAI)☆17Apr 14, 2015Updated 11 years ago
- 🍶 Genome assembly with short sequence reads☆26Jun 4, 2026Updated last month
- Draw pan- and core-genome curves from proteinortho output☆14Oct 26, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- IS mapping software☆58Dec 3, 2021Updated 4 years ago
- Needleman-Wunsch Algorithm for global alignment and local alignment☆12Feb 12, 2020Updated 6 years ago
- A Simulator for Bacterial Machine learning and Genome-Wide Association Studies☆22Jul 21, 2021Updated 4 years ago
- Efficient target prediction incorporating accessibility of interaction sites☆56Feb 23, 2026Updated 4 months ago
- A draft genome scaffolder that uses multiple reference genomes in a graph-based approach.☆47Feb 17, 2021Updated 5 years ago
- Analisi dati del COVID 19 in Italia☆11Apr 24, 2020Updated 6 years ago
- Mapping-free variant caller for short-read Illumina data☆21Apr 2, 2020Updated 6 years ago
- Analysis for svaseq paper☆20Aug 20, 2014Updated 11 years ago
- Processing pipeline for pan-genome visulization and exploration☆145Oct 9, 2023Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A methodology to rapidly leverage whole genome sequencing of bacterial isolates for clinical identification.☆35Dec 2, 2024Updated last year
- A cookiecutter template that reflects my favored structure for setting up Snakemake-based analysis pipelines.☆16Jul 25, 2016Updated 9 years ago
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆13Mar 12, 2024Updated 2 years ago
- Genome scale metabolic models in SBML format☆11Nov 16, 2021Updated 4 years ago
- A snakemake workflow for benchmarking variant calling approaches with Genome in a Bottle (GIAB), CHM (syndip) or other custom datasets☆13Jun 26, 2026Updated last week
- ☆11Sep 16, 2020Updated 5 years ago
- Experiments for "Scaling read aligners to hundreds of threads on general-purpose processors"☆11Jun 8, 2018Updated 8 years ago
- the toolbox for Microbial and personalized GEM, REactiobiome and community NEtwork modelling☆11Feb 3, 2024Updated 2 years ago
- ☆11Jan 7, 2020Updated 6 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Command line interface and Python client library for the One Codex API☆25Updated this week
- A tool to easily create informative genomic feature plots☆17Dec 26, 2022Updated 3 years ago
- A simple program for evaluate the assembly of a give genome.☆18Mar 3, 2023Updated 3 years ago
- A collection of tools to work with Illumina's basespace☆13Apr 10, 2019Updated 7 years ago
- ☆10Oct 21, 2023Updated 2 years ago
- ☆17Jun 5, 2026Updated last month
- The NanoPipe pipeline analyzes reads generated by the Oxford Nanopore sequencing devices. As a result, it provides alignments to any targ…☆18Dec 21, 2018Updated 7 years ago
- Muller diagrams excel at visualizing evolutionary dynamics of a population over time. A common use case, and the intended use case durin…☆15Oct 13, 2020Updated 5 years ago
- Microsoft Azure HPC & Big Compute☆15Aug 18, 2019Updated 6 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆16Sep 8, 2021Updated 4 years ago
- ☆34Dec 20, 2023Updated 2 years ago
- Genome alignment and synteny plots☆35Mar 24, 2026Updated 3 months ago
- Python package for creating, calibrating and simulating RBA models☆13Apr 8, 2026Updated 2 months ago
- The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.☆53Feb 8, 2026Updated 4 months ago
- PGPg_finder is a command-line tool that offers different workflows for genome and metagenome annotation of Plant-Growth Promotion Genes. …☆32Jan 20, 2026Updated 5 months ago
- Pneumococcal Capsular Typing tool for NGS data☆18Apr 6, 2021Updated 5 years ago