yoavram / curveballLinks
Predicting microbial growth in a mixed culture from growth curve data
☆14Updated 3 months ago
Alternatives and similar repositories for curveball
Users that are interested in curveball are comparing it to the libraries listed below
Sorting:
- Functional Analysis of Metagenomes by Likelihood Inference☆17Updated 5 years ago
- Scripts used in the publication Tyler P. Barnum, Israel A. Figueroa, Charlotte I. Carlström, Lauren N. Lucas, Anna L. Engelbrektson, and …☆10Updated 5 years ago
- ☆22Updated 2 years ago
- Code for detecting genomic island insertions in clades of microbes.☆19Updated last year
- HMmer Based UndeRstandinG of gene clustERs☆14Updated last week
- SpydrPick: mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure.☆13Updated 3 years ago
- ☆21Updated 4 months ago
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆18Updated 3 years ago
- alignment-free coverage calculation for metagenomic binning >100 times faster☆44Updated 2 months ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆27Updated last month
- Automatic eukaryotic taxonomic classification☆28Updated last month
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆38Updated 3 months ago
- ☆19Updated 2 years ago
- PLSDB pipeline to collect bacterial plasmids from NCBI☆38Updated 7 months ago
- Plot microbiome time series in parallel☆26Updated last year
- ☆38Updated 2 weeks ago
- TAXnomic Profile Aggregation and STAndardisation☆40Updated 7 months ago
- Bacterial Operon Finder for Functional Organization☆15Updated last year
- A functional profiler for metagenomes using FracMinHash☆16Updated 3 months ago
- A selection of short scripts for analyzing microbial genomes☆14Updated 6 years ago
- Reference Phylogeny for Bacterial and Archaeal Genomes☆25Updated 2 years ago
- Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin☆15Updated 8 months ago
- Strain Prediction and Analysis with Representative SEquence☆19Updated 6 months ago
- A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.☆17Updated 9 months ago
- Code, scripts, some logs and general misc. from to the RNA viruses in MetaTranscriptome discovery project.☆10Updated 2 years ago
- BiG-MEx implementation as Docker images and R packages☆13Updated 3 years ago
- PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.☆18Updated 5 months ago
- Phylogenetic compression of extremely large genome collections [661k ↘𝟭𝟲𝗚𝗶𝗕 | BIGSIdata ↘𝟰𝟴𝗚𝗶𝗕 | AllTheBact'23 ↘𝟳𝟱𝗚𝗶𝗕]☆33Updated 2 months ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆32Updated 9 months ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆24Updated 10 months ago