Phage prediction tools
☆15Aug 1, 2023Updated 2 years ago
Alternatives and similar repositories for Phage_tools
Users that are interested in Phage_tools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Phage-Host Interaction Search Tool☆29Jul 8, 2024Updated last year
- Comparisons of multiple different prophage predictions☆26Feb 12, 2026Updated last month
- A tool for distinguish temperate phage-derived and virulent phage-derived sequence in metavirome data using deep learning☆26Nov 20, 2023Updated 2 years ago
- Predict prokaryotic host for phage metagenomic sequences☆55Sep 17, 2024Updated last year
- Workflow to assign Taxonomy to a bacteriophage genome isolate☆38Mar 25, 2025Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny☆59Jun 4, 2025Updated 9 months ago
- ☆18May 13, 2021Updated 4 years ago
- ☆38Dec 6, 2023Updated 2 years ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆38Dec 20, 2024Updated last year
- A repo to reproduce the experiments in the YACHT manuscript☆11Nov 2, 2023Updated 2 years ago
- a comparative genome browser for bacteriophages☆21Jan 17, 2025Updated last year
- Prediction of prophages from bacterial genomes☆81Mar 17, 2026Updated last week
- Source code for SimBac, a bacterial genome simulator☆14Sep 20, 2024Updated last year
- A tool for identifying phages and plasmids from metagenomic fragments using deep learning☆44Apr 13, 2021Updated 4 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- A tool to detect RRNPP-type quorum sensing systems☆10Mar 24, 2023Updated 3 years ago
- Metagenomics-focused BAM file manipulation☆15Jul 8, 2019Updated 6 years ago
- Neptune: Genomic Signature Discovery☆21Nov 20, 2024Updated last year
- Cenote-Taker2: Discover and Annotate Divergent Viral Contigs (Please use Cenote-Taker 3 instead)☆55Jan 19, 2024Updated 2 years ago
- Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment☆24Oct 16, 2024Updated last year
- ☆11Jul 3, 2022Updated 3 years ago
- A simple program to classify the lifestyle of phages.☆17May 22, 2023Updated 2 years ago
- Extremely accurate algorithm used to group DNA sequences from microbial communities into operational taxonomic units (proxy for species) …☆14Nov 20, 2018Updated 7 years ago
- This is the repository for DeepHost, a phage host prediction tool.☆20Dec 12, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Source code of the VirSorter tool, also available as an App on CyVerse/iVirus (https://de.iplantcollaborative.org/de/)☆101Oct 3, 2020Updated 5 years ago
- ☆51Updated this week
- Identify phage regions in bacterial genomes for masking purposes☆33Sep 5, 2019Updated 6 years ago
- ☆12Sep 11, 2025Updated 6 months ago
- ☆21Nov 17, 2022Updated 3 years ago
- Ensemble binning strategies for combining the output of multiple binning methods.☆22Mar 11, 2023Updated 3 years ago
- A DRAFT, early stage book on snakemake.☆22Nov 1, 2023Updated 2 years ago
- Identifying viruses from metagenomic data by deep learning☆150Jun 1, 2025Updated 9 months ago
- Host prediction for phages☆26Nov 6, 2024Updated last year
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Sketch-based surveillance platform☆14Dec 17, 2024Updated last year
- customizable pipeline to identify viral sequences from (meta)genomic data☆283Nov 28, 2024Updated last year
- Experiments with using BIGSI data structure for metagenomic and QC applications☆19Aug 12, 2024Updated last year
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆53Feb 4, 2026Updated last month
- emm Automatic Isolate Labeller☆12Mar 25, 2025Updated last year
- Metaphor: a general-purpose workflow for assembly and binning of metagenomes☆40Nov 14, 2025Updated 4 months ago
- Published in PLOS ONE. Phage-host interaction prediction tool that uses protein language models to represent the receptor-binding protein…☆17Jul 13, 2025Updated 8 months ago