Phage prediction tools
☆15Aug 1, 2023Updated 2 years ago
Alternatives and similar repositories for Phage_tools
Users that are interested in Phage_tools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Phage-Host Interaction Search Tool☆33Jul 8, 2024Updated 2 years ago
- Comparisons of multiple different prophage predictions☆26Feb 12, 2026Updated 5 months ago
- A tool for distinguish temperate phage-derived and virulent phage-derived sequence in metavirome data using deep learning☆27Nov 20, 2023Updated 2 years ago
- Predict prokaryotic host for phage metagenomic sequences☆56Sep 17, 2024Updated last year
- Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny☆61Jun 4, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆20May 13, 2021Updated 5 years ago
- ☆37Dec 6, 2023Updated 2 years ago
- A tool to detect RRNPP-type quorum sensing systems☆10Mar 24, 2023Updated 3 years ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆39Dec 20, 2024Updated last year
- A repo to reproduce the experiments in the YACHT manuscript☆12Nov 2, 2023Updated 2 years ago
- A tool for identifying phages and plasmids from metagenomic fragments using deep learning☆44Apr 13, 2021Updated 5 years ago
- Neptune: Genomic Signature Discovery☆21May 1, 2026Updated 2 months ago
- a comparative genome browser for bacteriophages☆21Jul 18, 2026Updated last week
- Source code for SimBac, a bacterial genome simulator☆14Sep 20, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Prediction of prophages from bacterial genomes☆87May 1, 2026Updated 2 months ago
- Metagenomics-focused BAM file manipulation☆15Jul 8, 2019Updated 7 years ago
- Cenote-Taker2: Discover and Annotate Divergent Viral Contigs (Please use Cenote-Taker 3 instead)☆56Jan 19, 2024Updated 2 years ago
- ☆11Jul 3, 2022Updated 4 years ago
- A simple program to classify the lifestyle of phages.☆18May 22, 2023Updated 3 years ago
- Workflow to assign Taxonomy to a bacteriophage genome isolate☆41Apr 20, 2026Updated 3 months ago
- Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment☆25Oct 16, 2024Updated last year
- Extremely accurate algorithm used to group DNA sequences from microbial communities into operational taxonomic units (proxy for species) …☆14Nov 20, 2018Updated 7 years ago
- Source code of the VirSorter tool, also available as an App on CyVerse/iVirus (https://de.iplantcollaborative.org/de/)☆101Oct 3, 2020Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- This is the repository for DeepHost, a phage host prediction tool.☆22Dec 12, 2024Updated last year
- Identify phage regions in bacterial genomes for masking purposes☆33Sep 5, 2019Updated 6 years ago
- Scripts and reference files to type Group A Streptococcus☆11Apr 1, 2026Updated 3 months ago
- ☆12Sep 11, 2025Updated 10 months ago
- ☆20Nov 17, 2022Updated 3 years ago
- Ensemble binning strategies for combining the output of multiple binning methods.☆22Mar 11, 2023Updated 3 years ago
- Identifying viruses from metagenomic data by deep learning☆154May 5, 2026Updated 2 months ago
- Sketch-based surveillance platform☆14Updated this week
- customizable pipeline to identify viral sequences from (meta)genomic data☆296Nov 28, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- SameStr identifies shared strains between pairs of metagenomic samples based on the similarity of SNV profiles.☆27Nov 19, 2025Updated 8 months ago
- Host prediction for phages☆28Nov 6, 2024Updated last year
- emm Automatic Isolate Labeller☆15Mar 25, 2025Updated last year
- Pipeline for major biological analyses.☆35Mar 30, 2022Updated 4 years ago
- Metaphor: a general-purpose workflow for assembly and binning of metagenomes☆40Nov 14, 2025Updated 8 months ago
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆57Jul 9, 2026Updated 2 weeks ago
- ☆56Mar 29, 2026Updated 4 months ago