WGLab / GDPLinks
Group lasso based Deep Neural Network for Cancer Prognosis
☆15Updated 5 years ago
Alternatives and similar repositories for GDP
Users that are interested in GDP are comparing it to the libraries listed below
Sorting:
- R package for the identification of cancer-associated mutated genes using gene expression and mutation data.☆10Updated 3 years ago
- Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit☆49Updated 2 years ago
- BioBombe: Sequentially compressed gene expression features enhances biological signatures☆66Updated last year
- Automated and variant-aware CRISPR/Cas9 editing outcome predictor☆10Updated 3 years ago
- 2018 Recommended Papers to Read in Bioinformatics as Voted by Bioinformaticians☆26Updated 7 years ago
- Pandas API for multiple Gene Set Enrichment Analysis implementations in Python (GSEApy, cudaGSEA, GSEA)☆15Updated 2 years ago
- Feature extraction algorithm for genomic data☆15Updated 3 years ago
- ☆18Updated 8 years ago
- Automated Modelling for Biological Evidence-based Research☆46Updated last year
- ShinyLearner: a software framework for performing benchmarks of machine-learning classification algorithms☆18Updated 3 years ago
- ☆12Updated last year
- Creating multi-resolution embeddings and clusters from high dimensional data☆55Updated 10 months ago
- Compute a 2D embedding of a data matrix given supervised class information.☆12Updated 5 years ago
- An unsupervised transfer learning approach for rare disease transcriptomics☆44Updated 5 years ago
- DeepProfile framework, which learns a variational autoencoder (VAE) network from a vast quantity of publicly available gene expression sa…☆19Updated 7 years ago
- Analysis notebooks for "SARS-CoV-2 entry factors are highly expressed in nasal epithelial cells together with innate immune genes".☆14Updated 4 years ago
- ☆14Updated 2 months ago
- An accurate and efficient deep learning method for single-cell RNA-seq data imputation☆89Updated 3 years ago
- Towards Gene Expression Convolutions using Gene Interaction Graphs☆75Updated 3 years ago
- ☆67Updated last year
- Similarity Network Fusion☆32Updated 10 years ago
- Concise: Keras extension for regulatory genomics☆35Updated 2 years ago
- using graph convolutional neural network and spaital transcriptomics data to infer cell-cell interactions☆56Updated 4 years ago
- A python library for creating simulated regulatory DNA sequences☆38Updated 2 years ago
- deep learning toolkit (written on top of tensorflow) to streamline computational biology analysis☆22Updated 2 years ago
- This is a companion repository for the article "Comparative analysis of machine learning classifiers and calibration algorithms for estim…☆23Updated 3 years ago
- ☆24Updated 3 years ago
- Notebooks accompanying the paper "Navigating the pitfalls of applying machine learning in genomics"☆45Updated last year
- netZooPy is a network biology package implemented in Python.☆89Updated last month
- Biological Network Integration using Convolutions☆62Updated last year