Alternatives and similar repositories for SARS-COV-2_B4B

Users that are interested in SARS-COV-2_B4B are comparing it to the libraries listed below

• SvetlanaUP / A-microbiologist-wants-to-compute
  This repo collects the list of learning online resources related to microbiome computational science and tools.
  ☆96Updated 9 months ago
• digo4 / Clinical-Genomics
  Here we are going to discuss variant calling on human datasets using GATK Best practices pipeline
  ☆43Updated last year
• AstrobioMike / GToTree
  A user-friendly workflow for phylogenomics
  ☆219Updated 2 weeks ago
• NBISweden / GAAS
  Genome Assembly and Annotation Service code
  ☆215Updated last year
• labgem / PPanGGOLiN
  Build a partitioned pangenome graph from microbial genomes
  ☆275Updated last week
• moshi4 / pyGenomeViz
  A genome visualization python package for comparative genomics
  ☆353Updated 3 months ago
• nextgenusfs / funannotate
  Eukaryotic Genome Annotation Pipeline
  ☆361Updated last month
• biobakery / biobakery
  bioBakery tools for meta'omic profiling
  ☆285Updated 2 months ago
• biobakery / humann
  HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).
  ☆208Updated last year
• franciscozorrilla / metaGEM
  An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within micro…
  ☆246Updated last year
• aineniamh / snipit
  snipit: summarise snps relative to your reference sequence
  ☆164Updated 3 months ago
• SvetlanaUP / Microbiome-etc-Podcasts
  This repo collects the list of podcasts related to microbiome science: science, microbiology and bioinformatics.
  ☆29Updated last week
• ncbi / pgap
  NCBI Prokaryotic Genome Annotation Pipeline
  ☆351Updated last month
• gtonkinhill / panaroo
  An updated pipeline for pangenome investigation
  ☆308Updated 5 months ago
• nf-core / ampliseq
  Amplicon sequencing analysis workflow using DADA2 and QIIME2
  ☆212Updated last month
• nextflow-io / training
  Nextflow training material
  ☆187Updated last week
• sanger-pathogens / snp-sites
  Finds SNP sites from a multi-FASTA alignment file
  ☆264Updated 4 years ago
• rpetit3 / fastq-dl
  Download FASTQ files from SRA or ENA repositories.
  ☆340Updated 2 months ago
• nf-core / mag
  Assembly and binning of metagenomes
  ☆244Updated last week
• gamcil / clinker
  Gene cluster comparison figure generator
  ☆604Updated 8 months ago
• rrwick / Trycycler
  A tool for generating consensus long-read assemblies for bacterial genomes
  ☆330Updated last year
• AdmiralenOla / Scoary
  Pan-genome wide association studies
  ☆202Updated last year
• bactopia / bactopia
  A flexible pipeline for complete analysis of bacterial genomes
  ☆468Updated this week
• schneebergerlab / plotsr
  Tool to plot synteny and structural rearrangements between genomes
  ☆318Updated 4 months ago
• BioInfoTools / BBMap
  (Not Offical) BBMap short read aligner, and other bioinformatic tools.
  ☆239Updated 4 years ago
• jiarong / VirSorter2
  customizable pipeline to identify viral sequences from (meta)genomic data
  ☆262Updated 8 months ago
• StaPH-B / docker-builds
  Dockerfiles and documentation on tools for public health bioinformatics
  ☆211Updated this week
• jotech / gapseq
  Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks
  ☆186Updated this week
• MrOlm / drep
  Rapid comparison and dereplication of genomes
  ☆304Updated 2 months ago
• linnabrown / run_dbcan
  Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…
  ☆154Updated 4 months ago