WCSCourses / SARS-COV-2_B4BLinks
This is a repository for development of the SARS-CoV-2 Bioinformatics for Beginners Course
☆11Updated last year
Alternatives and similar repositories for SARS-COV-2_B4B
Users that are interested in SARS-COV-2_B4B are comparing it to the libraries listed below
Sorting:
- This repo collects the list of learning online resources related to microbiome computational science and tools.☆101Updated last year
- A user-friendly workflow for phylogenomics☆222Updated 3 weeks ago
- Here we are going to discuss variant calling on human datasets using GATK Best practices pipeline☆43Updated last year
- Tool to plot synteny and structural rearrangements between genomes☆333Updated 8 months ago
- HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).☆227Updated 2 weeks ago
- Eukaryotic Genome Annotation Pipeline☆369Updated 5 months ago
- Genome Assembly and Annotation Service code☆215Updated last year
- Robs manual for the computational genomics and bioinformatics class.☆265Updated last year
- Amplicon sequencing analysis workflow using DADA2 and QIIME2☆227Updated 3 weeks ago
- An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within micro…☆253Updated last year
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆243Updated 4 years ago
- Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks☆195Updated this week
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆287Updated last week
- Build a partitioned pangenome graph from microbial genomes☆290Updated 3 weeks ago
- Finds SNP sites from a multi-FASTA alignment file☆269Updated 4 years ago
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆143Updated 4 months ago
- bioBakery tools for meta'omic profiling☆297Updated 6 months ago
- ☆150Updated last year
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆303Updated last week
- Assembly and binning of metagenomes☆262Updated last week
- PAML is a package of programs for phylogenetic analyses of DNA or protein sequences using maximum likelihood. Please report only **techni…☆178Updated 2 months ago
- An updated pipeline for pangenome investigation☆332Updated 9 months ago
- Pipeline to fetch metadata and raw FastQ files from public databases☆183Updated 3 weeks ago
- Assembly and intrahost/low-frequency variant calling for viral samples☆149Updated 2 weeks ago
- ☆226Updated 10 months ago
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆360Updated 4 months ago
- Dockerfiles and documentation on tools for public health bioinformatics☆216Updated this week
- customizable pipeline to identify viral sequences from (meta)genomic data☆275Updated last year
- ☆62Updated last year
- Metatranscriptomics Tutorial☆66Updated 2 years ago