Alternatives and similar repositories for SARS-COV-2_B4B

Users that are interested in SARS-COV-2_B4B are comparing it to the libraries listed below

• SvetlanaUP / A-microbiologist-wants-to-compute
  This repo collects the list of learning online resources related to microbiome computational science and tools.
  ☆98Updated 10 months ago
• AstrobioMike / GToTree
  A user-friendly workflow for phylogenomics
  ☆219Updated last month
• franciscozorrilla / metaGEM
  An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within micro…
  ☆247Updated last year
• BioInfoTools / BBMap
  (Not Offical) BBMap short read aligner, and other bioinformatic tools.
  ☆241Updated 4 years ago
• nf-core / mag
  Assembly and binning of metagenomes
  ☆247Updated this week
• biobakery / biobakery
  bioBakery tools for meta'omic profiling
  ☆284Updated 3 months ago
• gtonkinhill / panaroo
  An updated pipeline for pangenome investigation
  ☆311Updated 6 months ago
• digo4 / Clinical-Genomics
  Here we are going to discuss variant calling on human datasets using GATK Best practices pipeline
  ☆43Updated last year
• StaPH-B / docker-builds
  Dockerfiles and documentation on tools for public health bioinformatics
  ☆213Updated last week
• SvetlanaUP / Microbiome-etc-Podcasts
  This repo collects the list of podcasts related to microbiome science: science, microbiology and bioinformatics.
  ☆29Updated 3 weeks ago
• labgem / PPanGGOLiN
  Build a partitioned pangenome graph from microbial genomes
  ☆280Updated this week
• biobakery / humann
  HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).
  ☆214Updated 2 weeks ago
• nf-core / ampliseq
  Amplicon sequencing analysis workflow using DADA2 and QIIME2
  ☆217Updated last month
• rrwick / Trycycler
  A tool for generating consensus long-read assemblies for bacterial genomes
  ☆332Updated last week
• jotech / gapseq
  Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks
  ☆187Updated 3 weeks ago
• ncbi / pgap
  NCBI Prokaryotic Genome Annotation Pipeline
  ☆354Updated 3 weeks ago
• aineniamh / snipit
  snipit: summarise snps relative to your reference sequence
  ☆163Updated 4 months ago
• nf-core / taxprofiler
  Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
  ☆161Updated this week
• nf-core / fetchngs
  Pipeline to fetch metadata and raw FastQ files from public databases
  ☆180Updated 2 months ago
• AdmiralenOla / Scoary
  Pan-genome wide association studies
  ☆202Updated last year
• jenniferlu717 / KrakenTools
  KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files
  ☆350Updated last month
• nextgenusfs / funannotate
  Eukaryotic Genome Annotation Pipeline
  ☆361Updated 2 months ago
• rrwick / Perfect-bacterial-genome-tutorial
  ☆145Updated last year
• SvetlanaUP / Microbiome-conferences-c
  This repo collects the list of conferences/meetings/workshops etc. related to microbiome science and tools.
  ☆61Updated last week
• jtamames / SqueezeMeta
  A complete pipeline for metagenomic analysis
  ☆428Updated 2 weeks ago
• cruizperez / MicrobeAnnotator
  Pipeline for metabolic annotation of microbial genomes
  ☆150Updated 6 months ago
• schneebergerlab / plotsr
  Tool to plot synteny and structural rearrangements between genomes
  ☆320Updated 5 months ago
• NBISweden / GAAS
  Genome Assembly and Annotation Service code
  ☆214Updated last year
• motu-tool / mOTUs
  motus - a tool for marker gene-based OTU (mOTU) profiling
  ☆156Updated last year
• jiarong / VirSorter2
  customizable pipeline to identify viral sequences from (meta)genomic data
  ☆267Updated 9 months ago