Alternatives and similar repositories for EPICON.Mycobiome

Users that are interested in EPICON.Mycobiome are comparing it to the libraries listed below

• Mengting-Maggie-Yuan / warming-network-complexity-stability
  Computer code for the manuscript "Climate Warming Enhances Microbial Network Complexity and Stability"
  ☆48Updated 3 years ago
• stegen / Stegen_etal_ISME_2013
  Code for running analyses carried out in Stegen et al. 2013, ISME
  ☆30Updated 7 years ago
• yedeng-lab / iNAP
  Integrated Network Analysis Pipeline
  ☆16Updated 6 months ago
• Russel88 / MicEco
  Various functions for analysis of microbial community data
  ☆45Updated 2 years ago
• DaliangNing / NST
  Normalized Stochasticity Ratio in community assembly
  ☆26Updated 8 months ago
• yuezhengfu / CNPS.cycle
  This is an R package for element cycle analysis using metagenomic data.
  ☆36Updated 6 months ago
• GuillemSalazar / EcolUtils
  Utilities for community ecology analysis
  ☆18Updated 4 years ago
• rogotoh / PMiFish
  ☆12Updated last year
• ryanjw / co-occurrence
  R scripts for performing co-occurrence analyses
  ☆34Updated 10 years ago
• qichao1984 / NCyc
  ☆49Updated 4 years ago
• moyn413 / nifHdada2
  dada2 formatted nifH database
  ☆12Updated last year
• YongxinLiu / Amplicon2017
  Data and scripts for amplicon pipeline
  ☆25Updated 6 years ago
• Linwei-Wu / Global-bacterial-diversity-in-WWTPs
  ☆23Updated 6 years ago
• shuojiao / Community-assembly-processes-and-species-coexistences-of-agricultural-soils-microbiome
  ☆21Updated 5 years ago
• jcmcnch / eASV-pipeline-for-515Y-926R
  This is a collection of scripts for analyzing mixed 16S/18S amplicon sequences using tools such as qiime2, DADA2, deblur, and bbtools
  ☆32Updated this week
• DaliangNing / iCAMP1
  Infer Community Assembly Mechanisms by Phylogenetic bin-based null model analysis (Version 1)
  ☆78Updated 4 months ago
• microbiota / amplicon
  Statistics and visualization for amplicon data
  ☆70Updated 2 years ago
• gmteunisse / fantaxtic
  Fantaxtic - Nested Bar Plots for Phyloseq Data
  ☆31Updated 11 months ago
• Russel88 / DOC
  Dissimilarity Overlap Curve analysis
  ☆11Updated 2 years ago
• bulksoil / BioProtocol
  Repo for a Microbiome Protocol
  ☆10Updated 7 years ago
• RiceMicrobiome / Edwards-et-al.-2014
  ☆14Updated 10 years ago
• danknights / sourcetracker
  ☆75Updated last year
• YongxinLiu / Culturome
  ☆27Updated last year
• donaldtmcknight / microDecon
  An R package for removing contamination from metabarcoding (e.g., microbiome) datasets post-sequencing
  ☆16Updated last year
• taowenmicro / Wen-etal-200214-paper-code
  ☆8Updated 5 years ago
• taowenmicro / phyloseq_translate
  phyloseq R
  ☆12Updated 5 years ago
• mestaki / qiime2-to-BugBase
  ☆12Updated 3 years ago
• metabaRfactory / metabaR
  metabaR is an R package to curate and visualise DNA metabarcoding data after basic bioinformatics analyses.
  ☆15Updated 4 months ago
• xuechunxu / DiTing
  DiTing: A pipeline to infer and compare biogeochemical pathways in metagenomic data
  ☆47Updated 7 months ago
• Weidong-Chen-Microbial-Ecology / Stochastic-assembly-of-river-microeukaryotes
  ☆14Updated 6 years ago