pcaExplorer - Interactive exploration of Principal Components of Samples and Genes in RNA-seq data
☆56Dec 11, 2025Updated 2 months ago
Alternatives and similar repositories for pcaExplorer
Users that are interested in pcaExplorer are comparing it to the libraries listed below
Sorting:
- Interactive Differential Expression AnaLysis - DE made accessible and reproducible☆31Dec 1, 2025Updated 3 months ago
- Computable build reports, package metadata, and download stats from the Bioconductor project☆22Feb 3, 2026Updated 3 weeks ago
- Glimma R package☆50Sep 2, 2024Updated last year
- R/shiny interface for interactive visualization of data in SummarizedExperiment objects☆229Jan 14, 2026Updated last month
- Marker gene profile estimation method used in NeuroExpresso manuscript☆14Jul 11, 2019Updated 6 years ago
- renders a KEGGML file and displays a KEGG pathway☆10Jul 14, 2016Updated 9 years ago
- ☆11Sep 5, 2018Updated 7 years ago
- Gene Set Enrichment Analysis in Python☆11Oct 26, 2018Updated 7 years ago
- R package providing Variance Stabilizing Transformations appropriate for RNA-Seq data☆21May 23, 2025Updated 9 months ago
- iDEP: integrated Differential Expression & Pathway analysis☆14Mar 1, 2019Updated 7 years ago
- Reproducible GSEA Benchmarking☆14Oct 30, 2025Updated 4 months ago
- Blacktie: a streamlined interface to the popular tophat/cufflinks RNA-seq pipeline☆26Oct 5, 2015Updated 10 years ago
- rbioapi: User-Friendly R Interface to Biologic Web Services' API☆24Jan 26, 2026Updated last month
- Transcript quantification import for modular pipelines☆142Sep 30, 2025Updated 5 months ago
- Single sample network reconstruction in R☆24Apr 6, 2020Updated 5 years ago
- Scripts for generating integrated dataset from publically available data sources to evaluate known genetic associations evidence of varyi…☆11May 5, 2020Updated 5 years ago
- Automate package and project setup for Bioconductor packages☆54Mar 21, 2025Updated 11 months ago
- R package: Simulate Expression data from igraph network using mvtnorm (CRAN; JOSS)☆24May 12, 2025Updated 9 months ago
- Seamless navigation through combined results of set-based and network-based enrichment analysis☆22Sep 14, 2025Updated 5 months ago
- Bioconductor package that makes BIG data pint-sized.☆21Feb 12, 2024Updated 2 years ago
- Machine learning use cases for teaching☆13Jul 12, 2017Updated 8 years ago
- 🧲 Multi-step adaptive estimation for reducing false positive selection in sparse regressions☆13Jul 21, 2024Updated last year
- Easily Process a Batch of Cox Models☆23Jul 26, 2025Updated 7 months ago
- Modular package for generation of sets of ranges representing the null hypothesis. These can take the form of bootstrapped ranges (bootRa…☆27Nov 20, 2025Updated 3 months ago
- ☆13Feb 16, 2019Updated 7 years ago
- The KEGGgraph package to parse KEGG pathways in R into graph objects☆14Apr 14, 2025Updated 10 months ago
- A unified downloader+preprocessor for cancer genomics datasets☆16Apr 7, 2024Updated last year
- Rna-seq pipeline, From FASTQ to differential expression analysis...☆20Mar 13, 2017Updated 8 years ago
- Genome Interval Arithmetic in R☆94Jan 11, 2026Updated last month
- ☆28Oct 5, 2018Updated 7 years ago
- interactive plots for differential expression analysis☆34Jun 19, 2025Updated 8 months ago
- A port of the matrixStats API to work with DelayedMatrix objects from the DelayedArray package☆15Apr 16, 2025Updated 10 months ago
- RStudio Connect API-driven Shiny application deployment example.☆23Nov 28, 2022Updated 3 years ago
- Transcript quantification import with automatic metadata detection☆69Feb 3, 2026Updated 3 weeks ago
- DEAPP shiny App☆30Jun 8, 2022Updated 3 years ago
- GEO RNA-seq Experiments Processing Pipeline☆22Oct 25, 2019Updated 6 years ago
- fastq quality assessment and filtering tool☆18Dec 10, 2022Updated 3 years ago
- ☆17May 15, 2024Updated last year
- A Grammar of Data Manipulation for Omics Data☆21Aug 31, 2020Updated 5 years ago