ccdmb / BioDendro
A package to cluster and visualise MS/MS spectral data
☆11Updated 4 years ago
Alternatives and similar repositories for BioDendro:
Users that are interested in BioDendro are comparing it to the libraries listed below
- Python package for processing direct-infusion mass spectrometry-based metabolomics and lipidomics data☆19Updated last year
- ☆20Updated last year
- ☆25Updated last year
- Realtime quality control for mass spectrometry data acquisition☆15Updated 4 months ago
- MS2Query - machine learning assisted library querying of MS/MS spectra☆44Updated 6 months ago
- Package to perform annotations of features from LC-MS All-ion fragmentation (AIF) metabolomics datasets☆12Updated 2 years ago
- Ms2 basEd saMple vectOrization (memo) package☆17Updated last year
- Untargeted metabolomics workflow for data processing and analysis written in Jupyter notebooks (Python)☆18Updated 4 months ago
- GLEAMS is a Learned Embedding for Annotating Mass Spectra.☆24Updated last year
- RHermes is a semi-targeted metabolomics package to deeply characterize biological and environmental samples.☆25Updated last week
- Dashboard for analysis of liquid chromatography (tandem) mass spectrometry data.☆33Updated 5 months ago
- Hierarchical orderings for mass spectrometry data. Canonically pronounced "chemis-tree".☆32Updated last year
- Large-scale tandem mass spectrum clustering using fast nearest neighbor searching.☆27Updated last week
- R-package - Automated Evaluation of Precursor Ion Purity for Mass Spectrometry Based Fragmentation in Metabolomics☆15Updated 10 months ago
- Matthew The's implementation of MaRaCluster☆11Updated 2 years ago
- Streamlining Mass Spectrometry Data Visualization with Pandas☆13Updated this week
- A workflow for metabolite identification and accurate profiling in multidimensional LC-IM-MS-DIA measurements. DOI: 10.5281/zenodo.☆14Updated last year
- The Mass Spec Query Language (MassQL) is a domain specific language meant to be a succinct way to express a query in a mass spectrometry …☆40Updated 3 months ago
- ☆14Updated 2 years ago
- Metabolome Annotation Workflow☆25Updated last year
- CANOPUS visualization for Jupyter notebook☆20Updated 3 years ago
- HUMOS is a web application aimed to help teaching Orbitrap mass spectrometry. HUMOS models a mass spectrum of a peptide mixture allowing …☆11Updated last week
- Scalable and self-optimizing processing workflow for untargeted LC-MS☆28Updated 7 months ago
- Tool for reliability assessment of omics peprocessing☆10Updated last year
- FBMN-STATS: A hitchhiker's guide to statistical analysis of Feature-based Molecular Networks☆36Updated last month
- ☆11Updated 2 years ago
- ☆11Updated 9 months ago
- An open-source Python package to unify raw MS data accession and storage.☆21Updated last week
- A Pipeline for LC-MS/MS Metabolomics Data Process and Analysis☆13Updated last week