samtools / hts-specsLinks
Specifications of SAM/BAM and related high-throughput sequencing file formats
☆676Updated 2 weeks ago
Alternatives and similar repositories for hts-specs
Users that are interested in hts-specs are comparing it to the libraries listed below
Sorting:
- C library for high-throughput sequencing data formats☆854Updated this week
- bedtools - the swiss army knife for genome arithmetic☆979Updated 2 months ago
- A quality control analysis tool for high throughput sequencing data☆510Updated last year
- A fast and sensitive gapped read aligner☆714Updated 5 months ago
- Java utilities for Bioinformatics☆499Updated this week
- Bayesian haplotype-based genetic polymorphism discovery and genotyping.☆830Updated this week
- MACS -- Model-based Analysis of ChIP-Seq☆743Updated last month
- The next version of bwa-mem☆756Updated 9 months ago
- Haplotype VCF comparison tools☆432Updated last year
- Graph-based alignment (Hierarchical Graph FM index)☆502Updated 6 months ago
- C++ API & command-line toolkit for working with BAM data☆424Updated 2 weeks ago
- cython + htslib == fast VCF and BCF processing☆397Updated 8 months ago
- A single molecule sequence assembler for genomes large and small.☆677Updated 3 weeks ago
- A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project.☆525Updated 2 weeks ago
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆470Updated last month
- Tools to process and analyze deep sequencing data.☆720Updated last month
- Transcript assembly and quantification for RNA-Seq☆439Updated 3 weeks ago
- ☆276Updated 3 months ago
- RSEM: accurate quantification of gene and isoform expression from RNA-Seq data☆442Updated last year
- A fast multi-threaded k-mer counter☆501Updated last year
- The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants☆487Updated last week
- C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings☆646Updated 2 weeks ago
- A tool to map bisulfite converted sequence reads and determine cytosine methylation states☆422Updated last month
- GTEx & TOPMed data production and analysis pipelines☆369Updated last week
- Near-optimal RNA-Seq quantification☆686Updated last month
- A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.☆1,014Updated 2 weeks ago
- This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.gith…☆765Updated this week
- Toolkit for processing sequences in FASTA/Q formats☆1,465Updated 9 months ago
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,309Updated this week
- Trinity RNA-Seq de novo transcriptome assembly☆859Updated 3 months ago