samtools / hts-specsLinks
Specifications of SAM/BAM and related high-throughput sequencing file formats
☆696Updated 3 months ago
Alternatives and similar repositories for hts-specs
Users that are interested in hts-specs are comparing it to the libraries listed below
Sorting:
- Bayesian haplotype-based genetic polymorphism discovery and genotyping.☆862Updated this week
- bedtools - the swiss army knife for genome arithmetic☆1,021Updated 10 months ago
- A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project.☆550Updated 8 months ago
- Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations☆716Updated last week
- The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants☆530Updated this week
- Haplotype VCF comparison tools☆455Updated 2 years ago
- A fast and sensitive gapped read aligner☆769Updated last week
- The next version of bwa-mem☆816Updated 3 months ago
- Java utilities for Bioinformatics☆516Updated this week
- A quality control analysis tool for high throughput sequencing data☆578Updated last month
- Graph-based alignment (Hierarchical Graph FM index)☆525Updated 2 weeks ago
- This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.gith…☆844Updated last month
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆507Updated 3 months ago
- Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight…☆877Updated last week
- Tools to process and analyze deep sequencing data.☆752Updated 6 months ago
- Near-optimal RNA-Seq quantification☆720Updated 3 weeks ago
- A single molecule sequence assembler for genomes large and small.☆697Updated 2 months ago
- C library for high-throughput sequencing data formats☆904Updated this week
- Tools for working with SAM/BAM data☆605Updated last year
- Data and analysis for NA12878 genome on nanopore☆401Updated 3 years ago
- Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis☆1,026Updated last year
- A fast multi-threaded k-mer counter☆529Updated last year
- Transcript assembly and quantification for RNA-Seq☆485Updated last month
- C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings☆666Updated 3 months ago
- ☆320Updated 5 years ago
- MACS -- Model-based Analysis of ChIP-Seq☆768Updated last week
- Toolkit for processing sequences in FASTA/Q formats☆1,526Updated 8 months ago
- Trinity RNA-Seq de novo transcriptome assembly☆881Updated last year
- SRA Tools☆1,300Updated this week
- Official code repository for GATK versions 1.0 through 3.7 (core engine). For GATK 4 code, see the https://github.com/broadinstitute/gatk…☆299Updated 7 years ago