Scripts and instructions to apply RiboTIE on Ribo-seq data
☆19Jul 22, 2025Updated 8 months ago
Alternatives and similar repositories for RiboTIE
Users that are interested in RiboTIE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Identifying genome-wide translated open reading frames using ribosome profiling☆25May 30, 2023Updated 2 years ago
- Pipeline for Quality Control of Ribo-Seq data, selection of P-site offsets, and codon usage statistics.☆19Aug 9, 2023Updated 2 years ago
- A gui application for the DeepMTP framework using streamlit☆35Aug 21, 2023Updated 2 years ago
- MaxQuant and Perseus Bug Reporting☆10Mar 19, 2025Updated last year
- CpG Transformer for imputation of single-cell methylomes☆37Sep 14, 2023Updated 2 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- The code for SCAGE.☆20Nov 30, 2025Updated 4 months ago
- Deep learning tools and models for MALDI-TOF mass spectra analysis☆28Jan 19, 2026Updated 3 months ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Jan 26, 2022Updated 4 years ago
- Official repository for Characterization of tumor heterogeneity through segmentation-free representation learning on multiplexed imaging …☆15Sep 28, 2025Updated 6 months ago
- Accurate estimation and robust modelling of translation dynamics at codon resolution☆23Jun 27, 2017Updated 8 years ago
- Simple implementations of attention modules adapted for the biological data domain.☆14May 20, 2025Updated 10 months ago
- Generate Ramachandran plots for single PDB structure and as heatmap for MD trajectory☆11Apr 6, 2022Updated 4 years ago
- ☆17Feb 27, 2023Updated 3 years ago
- ☆11Jan 15, 2020Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Transposable element expression at unique loci in single cells with CELLO-seq☆11Jun 17, 2024Updated last year
- PROTAC-Splitter is a machine learning framework designed for automated annotation of PROTAC substructures.☆23Jul 13, 2025Updated 9 months ago
- ☆14Mar 18, 2016Updated 10 years ago
- SkewC a novel quality-assessment method to identify poor quality single-cells in scRNA-seq experiments. The method relies on the measure …☆10Aug 2, 2023Updated 2 years ago
- ☆13Jan 4, 2026Updated 3 months ago
- ☆12Apr 29, 2024Updated last year
- The Patent and Literature Antibody Database (PLAbDab): an evolving reference set of functionally diverse, literature-annotated antibody s…☆13Sep 21, 2023Updated 2 years ago
- SableBind is an open-source framework dedicated to predicting protein-ligand binding affinity☆13Feb 6, 2025Updated last year
- A tool to use stereo-seq GEM and ssDNA to generate single-cell and 3D spatial resolved transtriptomics data☆14Oct 12, 2023Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Bulk (CP/GZ) and single-cell Iso-Seq in the developing human brain☆16May 30, 2024Updated last year
- Uncovering cell identity genes using differential stability of expression in single cells.☆14Jul 2, 2024Updated last year
- lncHOME (lncRNA Homology Explorer), a computational pipeline that identifies a unique coPARSE-lncRNA class with conserved genomic locatio…☆12Nov 2, 2023Updated 2 years ago
- This repository provides the dataset HEMIT for H&E to mIHC image-to-image translation task☆20Dec 11, 2024Updated last year
- ☆14Dec 22, 2025Updated 3 months ago
- ☆26Feb 23, 2026Updated last month
- ☆11Dec 15, 2025Updated 4 months ago
- NGS Tutorial☆15Apr 22, 2017Updated 8 years ago
- A list of bioinformatic tools for working with Ribo-Seq data☆21Apr 11, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- 3DGB is a workflow to build 3D models of genomes from HiC data☆13Jan 26, 2026Updated 2 months ago
- code for paper: Identifiability Guarantees for Causal Disentanglement from Soft Interventions☆15Nov 27, 2023Updated 2 years ago
- SongDriver uses a parallel mechanism of prediction and arrangement phases to achieve zero logical latency in real-time accompaniment gene…☆15Jan 5, 2026Updated 3 months ago
- ☆17Dec 9, 2024Updated last year
- ☆49Nov 19, 2025Updated 5 months ago
- ☆33Updated this week
- Reusable tools for working with next-generation sequencing (NGS) data☆12Oct 7, 2024Updated last year