gdewael / bio-attention
Simple implementations of attention modules adapted for the biological data domain.
☆13Updated 4 months ago
Alternatives and similar repositories for bio-attention:
Users that are interested in bio-attention are comparing it to the libraries listed below
- Implementation of Denoising Diffusion for protein design, but using the new Equiformer (successor to SE3 Transformers) with some addition…☆56Updated 2 years ago
- ☆12Updated 4 years ago
- ☆34Updated 4 years ago
- rho_VAE: an autoregressive parametrization of the VAE encoder☆15Updated 5 years ago
- Implementation of Tranception, an attention network, paired with retrieval, that is SOTA for protein fitness prediction☆31Updated 2 years ago
- Edmond's Chu Liu Algorithm for finding the minimum and maximum spanning tree☆9Updated 6 years ago
- Pytorch reimplementation of Molecule Attention Transformer, which uses a transformer to tackle the graph-like structure of molecules☆58Updated 4 years ago
- Implementation of the Triangle Multiplicative module, used in Alphafold2 as an efficient way to mix rows or columns of a 2d feature map, …☆29Updated 3 years ago
- A tool for predicting the effects of missense mutations on protein stability changes upon missense mutation using protein sequence only. …☆22Updated last year
- ☆33Updated 3 years ago
- Implementation of the Paper: "Parameterized Hypercomplex Graph Neural Networks for Graph Classification" by Tuan Le, Marco Bertolini, Fra…☆32Updated 3 years ago
- To be a next-generation DL-based phenotype prediction from genome mutations.☆19Updated 3 years ago
- Toy genetic algorithm in Pytorch☆33Updated this week
- Implementation of the algorithm detailed in paper "Evolutionary design of molecules based on deep learning and a genetic algorithm"☆22Updated last year
- Implementation of Insertion-deletion Denoising Diffusion Probabilistic Models☆30Updated 2 years ago
- ☆18Updated 3 years ago
- Source code for "A novel methodology on distributed representations of proteins using their interacting ligands"☆27Updated 5 years ago
- Source code for ICLR 2021 paper: "Molecule Optimization by Explainable Evolution"☆28Updated 3 years ago
- Extract Molecular SMILES embeddings from language models pre-trained with various objectives architectures.☆16Updated last year
- Checkout the new version at the link!☆22Updated 4 years ago
- Replication attempt for the Protein Folding Model described in https://www.biorxiv.org/content/10.1101/2021.08.02.454840v1☆37Updated 2 years ago
- Implementation of Rotary Embeddings, from the Roformer paper, in Tensorflow☆12Updated 3 years ago
- Official Implementation of "Transferring Inductive Biases Through Knowledge Distillation"☆14Updated 4 years ago
- Homology reduced UniProt, train-/valid-/testsets for language modeling☆16Updated 2 years ago
- Human Protein Atlas image classification competition☆13Updated last year
- ☆14Updated 3 years ago
- A TensorFlow implementation of the paper 'Set Transformer: A Framework for Attention-based Permutation-Invariant Neural Networks'☆31Updated 10 months ago
- Repository for ICLR'23 Long-tailed Learning Requires Feature Learning☆10Updated 2 years ago
- A Generative Adversarial Network Model Alternative to Animal Studies for Clinical Pathology Assessment☆8Updated last year
- Deep-Learning-Based Multivariate Curve Resolution☆14Updated 3 years ago