Stemanz / restring
Functional enrichment terms aggregator
☆18Updated last year
Alternatives and similar repositories for restring
Users that are interested in restring are comparing it to the libraries listed below
Sorting:
- Analyses for "State of the field in multi-omics research: from computational needs to data mining and sharing"☆26Updated last year
- A bioinformatics API to interface with public multi-omics bio databases for wicked fast data integration.☆32Updated 10 months ago
- ☆16Updated 5 years ago
- Deep learning-based prediction of regulatory genome sequences☆12Updated 5 years ago
- Universal RObust Peak Annotator☆16Updated last year
- Pandas API for multiple Gene Set Enrichment Analysis implementations in Python (GSEApy, cudaGSEA, GSEA)☆15Updated 2 years ago
- A pipeline to rapidly detect exogenous DNA integration sites using DNA or RNA paired-end sequencing data☆12Updated 2 years ago
- Interactive multi-omics data explorer to integrate and interactively explore transcripts, proteins and metabolites data.☆12Updated 11 months ago
- Genepy is an open source utils package covering a range of useful functions for large scale genomics data analysis in python☆20Updated last year
- PyIOmica (pyiomica) is a Python package for omics analyses.☆15Updated 2 years ago
- A metadata commons to store research software metadata☆41Updated last week
- GOMCL: a toolkit to cluster, evaluate, and extract non-redundant associations of Gene Ontology-based functions☆20Updated last year
- bioinformatics visualization tools with pyviz/bokeh☆20Updated last year
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Updated 2 years ago
- Python interface to amino acid properties and IEDB☆56Updated 7 months ago
- MuSiCa - Mutational Signatures in Cancer☆23Updated last year
- The OpEx (Optimised Exome) pipeline☆9Updated 6 years ago
- an open source data platform, developed in the Korcsmaros Group to store, analyze and integrate bioinformatics data☆11Updated 4 years ago
- PETAL (ParallEl paThways AnaLyzer): a Python tool for deep biological pathway analysis☆35Updated 2 years ago
- python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.☆16Updated 7 years ago
- Teaching materials for 6-7th March 2018 delivery of introductory bioinformatics training course for IBioIC.☆20Updated 7 years ago
- Fishers Exact Test for Python (Cython)☆65Updated last month
- A Bio2BEL package for integrating pathway-related information from KEGG in BEL☆13Updated 3 years ago
- A network based gene classification library to generate genome wide predictions about genes that are functionally similar to the input ge…☆20Updated this week
- A Python package for gene network analysis☆32Updated 2 years ago
- jinja2-enabled jupyter notebooks☆37Updated 2 weeks ago
- Tutorials for data science and bioinformatics☆12Updated last year
- A python package for showing JBrowse views☆25Updated last year
- Robust, tested workflows for RNA-seq, ChIP-seq and other high-throughput sequencing analysis☆23Updated last month
- Proteins as words, genomes as documents.☆20Updated 4 years ago