Alternatives and similar repositories for pepdata

Users that are interested in pepdata are comparing it to the libraries listed below

• boscoh / uniprot
  retrieve protein sequence identifiers and metadata from http://uniprot.org
  ☆68Updated 4 years ago
• GreiffLab / immuneSIM
  ☆38Updated 2 years ago
• openvax / mhctools
  Python interface to running command-line and web-based MHC binding predictors
  ☆99Updated last year
• bigbio / ibaqpy
  Absolute quantification package based on quantms.io
  ☆16Updated 3 months ago
• kentsislab / UltraQuant
  MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters
  ☆27Updated 7 years ago
• saketkc / pyseqlogo
  Python package to plot sequence logos
  ☆29Updated 2 years ago
• psathyrella / partis
  B- and T-cell receptor sequence annotation, simulation, clonal family and germline inference, and affinity prediction
  ☆61Updated this week
• nf-core / mhcquant
  Identify and quantify MHC eluted peptides from mass spectrometry raw data
  ☆42Updated last week
• FowlerLab / Enrich2
  Tool for deep mutational scanning experiments.
  ☆56Updated 9 months ago
• wilkelab / ProteinEvolutionToolbox
  ☆15Updated 9 years ago
• dincarnato / RNAFramework
  RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis
  ☆43Updated last week
• ebi-uniprot / ProtVista
  A BioJS viewer for protein sequence features
  ☆52Updated 3 years ago
• multimeric / Unipressed
  Comprehensive Python client for the Uniprot REST API
  ☆54Updated 2 months ago
• jessegmeyerlab / proteomics-tutorial
  ☆67Updated last year
• uclahs-cds / package-moPepGen
  Multi-Omics Peptide Generator
  ☆30Updated last month
• mfitzp / padua
  Proteomic Data Analysis with Python (pandas, scikit-learn, numpy, scipy)
  ☆24Updated 2 years ago
• nf-core / epitopeprediction
  A bioinformatics best-practice analysis pipeline for epitope prediction and annotation
  ☆49Updated last week
• jcg / d-tailor
  ☆14Updated 7 years ago
• iseekwonderful / PyPathway
  A python package for pathway visualization
  ☆38Updated 5 years ago
• openvax / varcode
  Library for manipulating genomic variants and predicting their effects
  ☆85Updated last year
• bcgsc / ntEmbd
  Deep learning embedding for nucleotide sequences
  ☆19Updated 9 months ago
• uio-bmi / compairr
  Comparison of Adaptive Immune Receptor Repertoires
  ☆28Updated 10 months ago
• ViennaRNA / forgi
  An RNA manipulation library.
  ☆56Updated last year
• labomics / MetaLogo
  MetaLogo: a heterogeneity-aware sequence logo generator and aligner
  ☆21Updated 2 years ago
• ablab / npdtools
  Natural Product Discovery tools -- a toolkit containing various pipelines for in silico analysis of natural product mass spectrometry da…
  ☆29Updated 3 years ago
• stracquadaniolab / pygna
  A Python package for gene network analysis
  ☆32Updated 3 years ago
• SBRG / Protein_ML
  Machine learning workflows for analyzing high-throughput protein data
  ☆26Updated 9 years ago
• evocellnet / funscoR
  R package for functionally scoring phosphorylation sites
  ☆21Updated 6 years ago
• hart-lab / drugz
  DRUGZ software
  ☆25Updated 4 years ago
• ding-lab / hotspot3d
  3D hotspot mutation proximity analysis tool
  ☆50Updated 2 years ago