Python interface to amino acid properties and IEDB
☆57Apr 8, 2026Updated this week
Alternatives and similar repositories for pepdata
Users that are interested in pepdata are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Repository for Deep Learning Models for Mass Spectrometry written in Rust☆16Mar 16, 2026Updated 3 weeks ago
- This is a repo for the Machine Learning Immunogenicity Team in the August 2016 NCBI Hackathon☆25Oct 28, 2016Updated 9 years ago
- Python-based framework for computational immunomics☆40Jul 7, 2021Updated 4 years ago
- Web-based database system for flow cell management (incl. REST API)☆16Mar 7, 2024Updated 2 years ago
- Python interface to running command-line and web-based MHC binding predictors☆101Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Utilities for analyzing mutations and neoepitopes in patient cohorts☆20Jun 7, 2018Updated 7 years ago
- Altered TCR Ligand Affinities and Structures☆12Dec 1, 2023Updated 2 years ago
- protein utilities in Rust☆32Nov 9, 2025Updated 5 months ago
- A pipeline for complete and accurate recovery of TCR repertoires from high throughput sequencing data.☆23Sep 10, 2023Updated 2 years ago
- Convert TCR gene names☆15Dec 26, 2025Updated 3 months ago
- A tool to annotate human VCF files with PolyPhen2 effect measures☆10Dec 26, 2022Updated 3 years ago
- Parallel merging, squaring off and ensemble calling for genomic variants☆20Sep 17, 2019Updated 6 years ago
- A tool to examine duplicate read characteristics in a BAM file☆12Dec 8, 2017Updated 8 years ago
- Personalized cancer epitope discovery and peptide vaccine prediction pipeline☆30Nov 14, 2017Updated 8 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- ☆48Jul 7, 2022Updated 3 years ago
- Predict mutated T-cell epitopes from sequencing data☆30Mar 17, 2026Updated 3 weeks ago
- Amino acid embedding and Convolutional Neural Network for HLA Class I-peptide binding prediction☆26Aug 3, 2017Updated 8 years ago
- Library for manipulating genomic variants and predicting their effects☆86Updated this week
- An R package to calculate indices and theoretical physicochemical properties of peptides and protein sequences.☆98Jan 23, 2024Updated 2 years ago
- ☆69Jun 21, 2022Updated 3 years ago
- Published at Bioinformatics☆12Jul 4, 2024Updated last year
- ProFET: Protein Feature Engineering Toolkit for Machine Learning☆57Sep 14, 2015Updated 10 years ago
- Code, intermediate results and an interactive visualisation on prediction of putative novel enzymes and small molecule binding proteins p…☆28Aug 9, 2023Updated 2 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- A small web ui and python api service to predict protein melting point temperatures.☆19Jan 21, 2025Updated last year
- MHC Class I and Class II neoantigen binding prediction☆36Jul 23, 2025Updated 8 months ago
- A flexible python program for generating figures from regions of the genome.☆13Apr 6, 2019Updated 7 years ago
- Peptide-MHC I binding affinity prediction☆243Mar 30, 2026Updated last week
- A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.☆41Jun 8, 2023Updated 2 years ago
- Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.☆25Nov 17, 2023Updated 2 years ago
- A method for identifying deleterious protein variation.☆11Nov 14, 2016Updated 9 years ago
- Load biophysicochemical properties of amino acids, Kidera factors and Atchley factors into R and Python in only a single line.☆16Nov 3, 2019Updated 6 years ago
- [DEPRECATED, see https://immunarch.com/] tcR: an R package for immune receptor repertoire advanced data analysis.☆40Jun 8, 2020Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Tools for generating and decoding error-correcting DNA barcodes☆15Feb 15, 2022Updated 4 years ago
- Sequences from Adaptyv Bio’s EGFR Protein Design Competition☆16Aug 28, 2025Updated 7 months ago
- PrimerTree: Visually Assessing the Specificity and Informativeness of Primer Pairs☆52Oct 28, 2025Updated 5 months ago
- A reporting pipeline for visualization of immunopeptidomics MS data.☆15Nov 19, 2022Updated 3 years ago
- pyPept: a python library to generate atomistic 2D and 3D representations of peptides☆91Nov 5, 2025Updated 5 months ago
- Rust implementation of the Haskell Rampart library that determines how intervals relate to each other.☆11Apr 21, 2022Updated 3 years ago
- A cross-package Bioconductor workflow for analysing methylation array data☆11Mar 31, 2017Updated 9 years ago