SpatialHackathon / SpaceHack2023
☆18Updated 2 weeks ago
Alternatives and similar repositories for SpaceHack2023:
Users that are interested in SpaceHack2023 are comparing it to the libraries listed below
- Tutorials for learning scverse☆15Updated this week
- Pan-Cancer Single Cell Classifier☆64Updated 9 months ago
- Unified access to several second-generation deconvolution methods☆65Updated 2 weeks ago
- An R package performing object conversion from ArchRProject (ArchR) to Signac SeuratObject (Signac)☆35Updated 6 months ago
- ☆35Updated 5 months ago
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆52Updated 6 months ago
- Single cell omics biology annotations☆50Updated last month
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆59Updated 8 months ago
- A unified interface to spatial transcriptomics deconvolution tools☆40Updated this week
- R package for pathway analysis in scRNA-seq data☆69Updated 6 months ago
- Gene group activity utility functions for Scanpy☆67Updated 2 months ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆72Updated 6 months ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆31Updated last week
- R implementation of GeneTrajectory☆53Updated 11 months ago
- ☆59Updated 6 months ago
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆24Updated 2 months ago
- ☆42Updated 4 months ago
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆71Updated 6 months ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆48Updated this week
- Functional Inference of Gene Regulation☆40Updated 8 months ago
- Latent Embedding Multivariate Regression☆87Updated 3 months ago
- Multiview Intercellular SpaTial modeling framework☆51Updated 11 months ago
- RNA-velocity informed embeddings for visualizing cellular trajectories☆43Updated 2 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆71Updated 10 months ago
- scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics☆89Updated this week
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆39Updated last year
- Framework for sensitive DE testing (using neighbourhoods)☆64Updated 7 months ago
- Python implementation of Milo for differential abundance testing on KNN graph☆62Updated 2 weeks ago
- ☆59Updated 8 months ago
- Multi-modal single cell analysis pipelines☆58Updated 3 weeks ago