SpatialHackathon / SpaceHack2023
☆18Updated this week
Alternatives and similar repositories for SpaceHack2023:
Users that are interested in SpaceHack2023 are comparing it to the libraries listed below
- Tutorials for learning scverse☆14Updated this week
- Pan-Cancer Single Cell Classifier☆62Updated 7 months ago
- Unified access to several second-generation deconvolution methods☆64Updated last month
- An R package performing object conversion from ArchRProject (ArchR) to Signac SeuratObject (Signac)☆33Updated 4 months ago
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆51Updated 5 months ago
- R package for pathway analysis in scRNA-seq data☆66Updated 5 months ago
- Single cell omics biology annotations☆48Updated 3 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆68Updated 8 months ago
- ☆42Updated 2 months ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆72Updated 4 months ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆59Updated 7 months ago
- A Snakemake pipeline for cellranger to process 10x single-cell RNAseq data☆16Updated 5 years ago
- Using TCR and expression for sequence embedding☆49Updated 2 months ago
- Gene group activity utility functions for Scanpy☆65Updated 3 weeks ago
- Inference of TCR motifs☆28Updated 2 months ago
- Genearlized mapping scripts for RNA-seq and Patch-seq data☆11Updated this week
- ☆33Updated 3 months ago
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆44Updated 10 months ago
- Single-cell Lung Cancer Atlas with 1.2M cells☆58Updated last month
- Capybara: A computational tool to measure cell identity and fate transitions☆57Updated 2 years ago
- R package for the analysis of single-cell immune repertoires☆41Updated last month
- ☆49Updated 2 months ago
- ☆34Updated 8 months ago
- A unified interface to spatial transcriptomics deconvolution tools☆39Updated last week
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆39Updated 10 months ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆60Updated 8 months ago
- Multi-modal single cell analysis pipelines☆58Updated this week
- Functional Inference of Gene Regulation☆39Updated 6 months ago
- RNA-velocity informed embeddings for visualizing cellular trajectories☆43Updated 2 years ago
- R implementation of GeneTrajectory☆51Updated 9 months ago