A diffusion-based ML model for de novo design of DNA, RNA, proteins, and mixed assemblies.
☆31Apr 2, 2026Updated 6 months ago
Alternatives and similar repositories for RFDpoly
Users that are interested in RFDpoly are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆71Oct 8, 2026Updated 3 weeks ago
- Utility to run RosettaCommons tools☆15May 5, 2026Updated 5 months ago
- Code and software used to design de novo protein nanomachines. Supplementary material for "Computational design of nanoscale rotational m…☆10Mar 19, 2022Updated 4 years ago
- JAX translation of BoltzGen☆12Nov 11, 2025Updated 11 months ago
- ☆261Sep 22, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Geometric deep learning method to predict protein binding interfaces from a protein structure.☆177Oct 11, 2023Updated 3 years ago
- Segmentation of nucleic acid binding interface on protein surface with geometric deep learning☆15May 3, 2023Updated 3 years ago
- Tool repository for CAR-PNN☆14Oct 7, 2026Updated 3 weeks ago
- All-Atom (Including Hydrogen!) Ligand-Conditioned Protein Sequence Design & Sidechain Packing GNN☆95Sep 4, 2026Updated last month
- ☆17May 18, 2026Updated 5 months ago
- IgGM adaptation for easy use in Google Colab☆12Aug 10, 2025Updated last year
- Several QM/MM tutorials for biological simulations adapted to CP2K. Tutorials adapted from AMBER, GMX, NAMD and CPMD softwares.☆26Oct 18, 2019Updated 7 years ago
- Energy-guided binder design pipeline built on BindCraft☆19Jun 6, 2025Updated last year
- nanobody melting temperature prediction using protein embeddings☆14Feb 24, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- protein docking stuff☆58Apr 2, 2026Updated 6 months ago
- Optimizing IDPs directly at the level of simulations via a continuous sequence representation.☆14Aug 10, 2025Updated last year
- PLACER is graph neural network for local prediction of protein-ligand conformational ensembles.☆269Nov 5, 2025Updated 11 months ago
- Central repository for biomolecular foundation models with shared trainers and pipeline components☆1,038Oct 22, 2026Updated last week
- ☆14Aug 26, 2026Updated 2 months ago
- Official repository of "ODesign: A World Model for Biomolecular Interaction Design"☆352Jul 1, 2026Updated 3 months ago
- Geometric Algebra Flow Matching (GAFL) for Protein Backbone Generation☆20May 5, 2026Updated 5 months ago
- ☆14Sep 11, 2025Updated last year
- ☆88Mar 23, 2026Updated 7 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- composite-objective protein design☆380Updated this week
- ☆12Jul 8, 2026Updated 3 months ago
- ☆12Jun 3, 2025Updated last year
- ☆11Apr 21, 2023Updated 3 years ago
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆73Apr 13, 2026Updated 6 months ago
- The Rosetta Bio-macromolecule modeling package. Available through license with the University of Washington.☆481Oct 21, 2026Updated last week
- Neural Iterative Selection-Expansion using LigandMPNN/LASErMPNN and Boltz-2x☆75Aug 11, 2026Updated 2 months ago
- A unified cross-attention model for predicting antigen binding specificity to both HLA and TCR molecules☆16May 29, 2026Updated 5 months ago
- Design a local part of a protein☆20Jan 12, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Fold Conditioned protein design pipeline based on AF2Multimer Hallucination☆56Jun 22, 2026Updated 4 months ago
- Feynman-Kac steering for controllable protein diffusion☆39Aug 16, 2026Updated 2 months ago
- ☆646Feb 6, 2025Updated last year
- Inference code for RFdiffusion2☆452Oct 22, 2026Updated last week
- protein backbone refinement☆16Sep 12, 2024Updated 2 years ago
- Official code release for Ambient Protein Diffusion☆35Aug 30, 2025Updated last year
- Towards a protein binder candidate for every protein☆43Sep 1, 2026Updated last month