ShujiaHuang / ilusLinks
A lightweight and handy variant calling pipeline generator for whole-genome sequencing (WGS) and whole exom sequencing data (WES) analysis by using GATK and Sentieon. 一个基于 GATK 和 Sentieon 的简易且全面的 WGS/WES 分析流程生成器.
☆140Updated 6 months ago
Alternatives and similar repositories for ilus
Users that are interested in ilus are comparing it to the libraries listed below
Sorting:
- a lightweight bam file depth statistical tool☆157Updated last year
- ☆136Updated 6 years ago
- Discovering known and novel miRNAs from small RNA sequencing data☆154Updated last year
- A Tool for integrated Quality Control and Preprocessing on FASTQ or BAM/CRAM files☆112Updated last year
- Gene fusion detection and visualization☆127Updated 3 years ago
- ☆154Updated 6 months ago
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆173Updated last year
- tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies☆174Updated 2 weeks ago
- ☆157Updated 3 years ago
- ☆20Updated 6 years ago
- AmpliconArchitect (AA) is a tool to identify one or more connected genomic regions which have simultaneous copy number amplification and …☆155Updated last year
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆165Updated 2 years ago
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆227Updated 4 months ago
- fork of RSeQC python RNAseq metrics suit of tools☆49Updated 6 years ago
- LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files☆192Updated 4 months ago
- Script to automatically create and run IGV snapshot batchscripts☆143Updated 2 years ago
- A short tutorial on how to use RSEM☆139Updated 5 years ago
- release version☆54Updated 3 years ago
- Full-Length Alternative Isoform analysis of RNA☆240Updated last week
- WisecondorX — An evolved WISECONDOR☆107Updated 3 months ago
- Download sequencing data and metadata from GSA, SRA, ENA, and DDBJ databases.☆224Updated this week
- a python extension of CNVnator -- a tool for CNV analysis from depth-of-coverage by mapped reads☆208Updated last month
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆250Updated 4 months ago
- HiC uniform processing pipeline☆61Updated 2 years ago
- Microsatellite instability (MSI) detection for tumor only data.☆111Updated last year
- Pathogen NGS Documentary☆151Updated last year
- Finder of Somatic Fusion Genes in RNA-seq data☆146Updated 2 months ago
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆145Updated 2 months ago
- a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads☆230Updated 3 years ago
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆244Updated last week