A lightweight and handy variant calling pipeline generator for whole-genome sequencing (WGS) and whole exom sequencing data (WES) analysis by using GATK and Sentieon. 一个基于 GATK 和 Sentieon 的简易且全面的 WGS/WES 分析流程生成器.
☆142May 20, 2025Updated 9 months ago
Alternatives and similar repositories for ilus
Users that are interested in ilus are comparing it to the libraries listed below
Sorting:
- Set of script for the paper on the cattle graph genome☆13Jan 10, 2023Updated 3 years ago
- This is the official development repository for BaseVar, which call variants for large-scale ultra low-pass (<1.0x) WGS data, especially …☆27Jul 28, 2025Updated 7 months ago
- 二代测序数据分析☆376Dec 6, 2023Updated 2 years ago
- Codes for Vmap1.1 and Vmap3☆11Jan 5, 2026Updated 2 months ago
- De novo lncRNA discovery pipeline, re-write of PLAR in shell and awk☆10Aug 2, 2023Updated 2 years ago
- BAMixChecker: A fast and efficient tool for sample matching checkup☆15Jun 12, 2022Updated 3 years ago
- Westlake BioBank for Chinese pilot project☆10May 17, 2023Updated 2 years ago
- Scripts in R for Landscape Genomics Analyses v.2☆10Feb 17, 2023Updated 3 years ago
- Web-based User-friendly Workflow for Metabolomics and Proteomics Data Analysis☆18May 3, 2023Updated 2 years ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆57Jan 26, 2023Updated 3 years ago
- A Snakemake workflow to process single samples or cohorts of Illumina paired-end sequencing data (WGS or WES) using trim galore/bwa/GATK4…☆34Jan 13, 2023Updated 3 years ago
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣☆11Apr 28, 2023Updated 2 years ago
- RNAseq analysis with Hisat2, stringtie, and ballgown☆17Aug 9, 2019Updated 6 years ago
- ☆14Oct 29, 2021Updated 4 years ago
- ☆28Sep 20, 2023Updated 2 years ago
- scripts for sequence and feature conversion, annotation, analysis ...☆28Mar 17, 2025Updated 11 months ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Aug 24, 2022Updated 3 years ago
- ☆12Feb 19, 2021Updated 5 years ago
- Easily construct the ML species tree with single-copy gene shared by different species.☆27Oct 26, 2018Updated 7 years ago
- Accurate haplotype construction and detection of selection signatures enabled by 889 high quality pig genome sequences☆13May 11, 2023Updated 2 years ago
- ☆24Jul 29, 2025Updated 7 months ago
- BamDeal: a comprehensive toolkit for bam manipulation☆54Dec 21, 2022Updated 3 years ago
- Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity☆17Mar 10, 2022Updated 3 years ago
- 基因组组装注释流程及脚本☆16Feb 12, 2023Updated 3 years ago
- A nextflow pipeline for analysing expression and splicing in RNA seq data from rare disease patient☆18Updated this week
- do some exercise☆14Dec 2, 2025Updated 3 months ago
- LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files☆205Jul 5, 2025Updated 8 months ago
- Codes for the lettuce resequencing project in 2020☆30Jun 28, 2021Updated 4 years ago
- ☆16May 10, 2023Updated 2 years ago
- The pipelines were built in the project resolving the genome of a diploid potato. Most of the scripts were sepcially designed to perform …☆23Jul 4, 2023Updated 2 years ago
- My R scripts, primarily R plotting scripts + some genomics software including 16S rRNA metataxnomics and RNAseq☆12Dec 19, 2022Updated 3 years ago
- bioinformatics learning☆13Oct 10, 2023Updated 2 years ago
- An ultra-fast and efficient genomic tool for coverage calculation☆170Feb 9, 2026Updated 3 weeks ago
- The cattle Genotype-Tissue Expression atlas v1☆28Mar 14, 2023Updated 2 years ago
- ☆23Nov 28, 2025Updated 3 months ago
- a python extension of CNVnator -- a tool for CNV analysis from depth-of-coverage by mapped reads☆211Oct 2, 2025Updated 5 months ago
- Copy number estimation and variant calling for duplicated genes using WGS.☆32Feb 24, 2026Updated last week
- ☆10Dec 2, 2025Updated 3 months ago
- Perform GWAS with gemma in a simple pipeline☆27Apr 26, 2025Updated 10 months ago