ShujiaHuang / ilusLinks
A lightweight and handy variant calling pipeline generator for whole-genome sequencing (WGS) and whole exom sequencing data (WES) analysis by using GATK and Sentieon. 一个基于 GATK 和 Sentieon 的简易且全面的 WGS/WES 分析流程生成器.
☆134Updated 2 weeks ago
Alternatives and similar repositories for ilus
Users that are interested in ilus are comparing it to the libraries listed below
Sorting:
- ☆135Updated 5 years ago
- Discovering known and novel miRNAs from small RNA sequencing data☆147Updated 9 months ago
- A short tutorial on how to use RSEM☆136Updated 5 years ago
- ☆151Updated 2 years ago
- ATAC-seq peak-calling and QC analysis pipeline☆201Updated 3 weeks ago
- Download sequencing data and metadata from GSA, SRA, ENA, and DDBJ databases.☆195Updated last week
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆159Updated 2 years ago
- RNA-Seq analysis workflow☆104Updated 3 years ago
- tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies☆159Updated 2 weeks ago
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆214Updated last month
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆226Updated this week
- AmpliconArchitect (AA) is a tool to identify one or more connected genomic regions which have simultaneous copy number amplification and …☆147Updated 11 months ago
- Full-Length Alternative Isoform analysis of RNA☆228Updated last week
- Go to☆36Updated this week
- ☆181Updated 7 years ago
- This Snakemake pipeline implements the GATK best-practices workflow☆253Updated last year
- SUPPA: Fast quantification of splicing and differential splicing☆275Updated 11 months ago
- Easier download/extract of FASTA/Q read data and metadata from the ENA, NCBI, AWS or GCP.☆269Updated 2 weeks ago
- A Tool for integrated Quality Control and Preprocessing on FASTQ or BAM/CRAM files☆109Updated last year
- Fast and accurate gene fusion detection from RNA-Seq data☆241Updated 2 months ago
- ☆261Updated 6 months ago
- a lightweight bam file depth statistical tool☆150Updated 8 months ago
- Detecting sites of genomic enrichment☆192Updated 2 years ago
- ☆147Updated last week
- ENCODE Uniform processing pipeline for ChIP-seq☆123Updated 5 years ago
- FEELnc : FlExible Extraction of LncRNA☆87Updated 8 months ago
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆252Updated 4 months ago
- LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files☆178Updated last year
- Script to automatically create and run IGV snapshot batchscripts☆141Updated 2 years ago
- Check strandedness of RNA-Seq fastq files☆124Updated 2 years ago