A lightweight and handy variant calling pipeline generator for whole-genome sequencing (WGS) and whole exom sequencing data (WES) analysis by using GATK and Sentieon. 一个基于 GATK 和 Sentieon 的简易且全面的 WGS/WES 分析流程生成器.
☆143Mar 21, 2026Updated this week
Alternatives and similar repositories for ilus
Users that are interested in ilus are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- 二代测序数据分析☆378Dec 6, 2023Updated 2 years ago
- This is the official development repository for BaseVar, which call variants for large-scale ultra low-pass (<1.0x) WGS data, especially …☆27Jul 28, 2025Updated 7 months ago
- Set of script for the paper on the cattle graph genome☆14Jan 10, 2023Updated 3 years ago
- Codes for Vmap1.1 and Vmap3☆11Jan 5, 2026Updated 2 months ago
- BAMixChecker: A fast and efficient tool for sample matching checkup☆15Jun 12, 2022Updated 3 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- De novo lncRNA discovery pipeline, re-write of PLAR in shell and awk☆10Aug 2, 2023Updated 2 years ago
- A Snakemake workflow to process single samples or cohorts of Illumina paired-end sequencing data (WGS or WES) using trim galore/bwa/GATK4…☆34Jan 13, 2023Updated 3 years ago
- An R package for summarizing and visualizing association analysis results of whole-genome/whole-exome sequencing (WGS/WES) studies genera…☆12Oct 16, 2024Updated last year
- Scripts in R for Landscape Genomics Analyses v.2☆10Feb 17, 2023Updated 3 years ago
- LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files☆207Jul 5, 2025Updated 8 months ago
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣☆11Apr 28, 2023Updated 2 years ago
- Westlake BioBank for Chinese pilot project☆10May 17, 2023Updated 2 years ago
- 整理常用的群体遗传学分析流程和脚本☆120Jan 16, 2026Updated 2 months ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Aug 24, 2022Updated 3 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Codes for the lettuce resequencing project in 2020☆30Jun 28, 2021Updated 4 years ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆57Jan 26, 2023Updated 3 years ago
- Important papers relating to the biology of cell free DNA☆19Sep 21, 2018Updated 7 years ago
- Web-based User-friendly Workflow for Metabolomics and Proteomics Data Analysis☆18May 3, 2023Updated 2 years ago
- ☆28Sep 20, 2023Updated 2 years ago
- ☆24Jul 29, 2025Updated 7 months ago
- a python extension of CNVnator -- a tool for CNV analysis from depth-of-coverage by mapped reads☆212Mar 16, 2026Updated last week
- DNA and RNA variant calling pipelines with HLA typing and Neoantigen predictions☆11Jul 8, 2021Updated 4 years ago
- Easily construct the ML species tree with single-copy gene shared by different species.☆27Oct 26, 2018Updated 7 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- DeepBSA is a novel bulked segregant analysis (BSA) software for the dissection of complex traits.☆22Aug 6, 2024Updated last year
- A Tool for integrated Quality Control and Preprocessing on FASTQ or BAM/CRAM files☆114Mar 28, 2024Updated last year
- ☆16May 10, 2023Updated 2 years ago
- This is the script used for analysis the population data of alfalfa☆11May 22, 2024Updated last year
- 基因组组装注释流程及脚本☆16Feb 12, 2023Updated 3 years ago
- do some exercise☆14Dec 2, 2025Updated 3 months ago
- Whole Exome/Whole Genome Sequencing alignment pipeline☆30Sep 18, 2024Updated last year
- RNAseq analysis with Hisat2, stringtie, and ballgown☆17Aug 9, 2019Updated 6 years ago
- ☆11Dec 1, 2020Updated 5 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆14Oct 29, 2021Updated 4 years ago
- BamDeal: a comprehensive toolkit for bam manipulation☆54Dec 21, 2022Updated 3 years ago
- The pipelines were built in the project resolving the genome of a diploid potato. Most of the scripts were sepcially designed to perform …☆24Jul 4, 2023Updated 2 years ago
- Accurate haplotype construction and detection of selection signatures enabled by 889 high quality pig genome sequences☆13May 11, 2023Updated 2 years ago
- The tutorial for performing single-/multi-trait association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using FAVOR…☆36Dec 3, 2024Updated last year
- An ultra-fast and efficient genomic tool for coverage calculation☆170Feb 9, 2026Updated last month
- ☆189Aug 16, 2017Updated 8 years ago