Alternatives and similar repositories for ilus

Users that are interested in ilus are comparing it to the libraries listed below

• rajewsky-lab / mirdeep2
  Discovering known and novel miRNAs from small RNA sequencing data
  ☆154Updated last year
• nloyfer / wgbs_tools
  tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies
  ☆172Updated 5 months ago
• Xinglab / rmats2sashimiplot
  ☆153Updated 5 months ago
• shiquan / bamdst
  a lightweight bam file depth statistical tool
  ☆156Updated last year
• WGLab / dragonstar2019
  ☆136Updated 6 years ago
• ENCODE-DCC / rna-seq-pipeline
  ☆156Updated 2 years ago
• MonashBioinformaticsPlatform / RSeQC
  fork of RSeQC python RNAseq metrics suit of tools
  ☆49Updated 6 years ago
• xryanglab / RiboCode
  release version
  ☆54Updated 3 years ago
• bli25 / RSEM_tutorial
  A short tutorial on how to use RSEM
  ☆138Updated 5 years ago
• PacificBiosciences / IsoSeq
  Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads
  ☆225Updated 3 months ago
• BioOmics / iSeq
  Download sequencing data and metadata from GSA, SRA, ENA, and DDBJ databases.
  ☆219Updated last week
• BGI-flexlab / SOAPnuke
  A Tool for integrated Quality Control and Preprocessing on FASTQ or BAM/CRAM files
  ☆110Updated last year
• virajbdeshpande / AmpliconArchitect
  AmpliconArchitect (AA) is a tool to identify one or more connected genomic regions which have simultaneous copy number amplification and …
  ☆155Updated last year
• signalbash / how_are_we_stranded_here
  Check strandedness of RNA-Seq fastq files
  ☆127Updated 3 years ago
• xuzhougeng / org.Osativa.eg.db
  ☆20Updated 6 years ago
• BoevaLab / FREEC
  Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data
  ☆172Updated last year
• dkoboldt / varscan
  Variant calling and somatic mutation/CNV detection for next-generation sequencing data
  ☆163Updated 2 years ago
• pzweuj / pzweuj.github.io
  Go to
  ☆36Updated 2 weeks ago
• OpenGene / GeneFuse
  Gene fusion detection and visualization
  ☆128Updated 3 years ago
• gpertea / gffcompare
  classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF
  ☆245Updated 3 months ago
• yupenghe / methylpy
  WGBS/NOMe-seq Data Processing & Differential Methylation Analysis
  ☆146Updated 2 years ago
• Xinglab / rmats-turbo
  ☆276Updated last week
• haowenz / chromap
  Fast alignment and preprocessing of chromatin profiles
  ☆206Updated last month
• ConesaLab / SQANTI3
  Tool for the Quality Control of Long-Read Defined Transcriptomes
  ☆240Updated last week
• CenterForMedicalGeneticsGhent / WisecondorX
  WisecondorX — An evolved WISECONDOR
  ☆105Updated 2 months ago
• stevekm / IGV-snapshot-automator
  Script to automatically create and run IGV snapshot batchscripts
  ☆143Updated 2 years ago
• BGI-shenzhen / LDBlockShow
  LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files
  ☆189Updated 3 months ago
• mhammell-laboratory / TEtranscripts
  A package for including transposable elements in differential enrichment analysis of sequencing datasets.
  ☆266Updated last month
• niu-lab / msisensor2
  Microsatellite instability (MSI) detection for tumor only data.
  ☆110Updated last year
• ding-lab / msisensor
  microsatellite instability detection using tumor only or paired tumor-normal data
  ☆132Updated 4 years ago