ShujiaHuang / ilus
A lightweight and handy variant calling pipeline generator for whole-genome sequencing (WGS) and whole exom sequencing data (WES) analysis by using GATK and Sentieon. 一个基于 GATK 和 Sentieon 的简易且全面的 WGS/WES 分析流程生成器.
☆131Updated last month
Alternatives and similar repositories for ilus:
Users that are interested in ilus are comparing it to the libraries listed below
- ☆135Updated 5 years ago
- Discovering known and novel miRNAs from small RNA sequencing data☆142Updated 5 months ago
- A short tutorial on how to use RSEM☆136Updated 4 years ago
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆156Updated last year
- This Snakemake pipeline implements the GATK best-practices workflow☆247Updated last year
- ATAC-seq peak-calling and QC analysis pipeline☆196Updated this week
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆202Updated 3 months ago
- Script to automatically create and run IGV snapshot batchscripts☆140Updated 2 years ago
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆206Updated this week
- RNA-Seq analysis workflow☆104Updated 3 years ago
- Full-Length Alternative Isoform analysis of RNA☆217Updated last week
- tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies☆140Updated last month
- ☆137Updated 2 weeks ago
- ☆238Updated 2 months ago
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆240Updated last week
- ASCAT R package☆174Updated 2 months ago
- LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files☆154Updated last year
- An ultra-fast and efficient genomic tool for coverage calculation☆140Updated 5 months ago
- Download sequencing data and metadata from GSA, SRA, ENA, and DDBJ databases.☆148Updated last month
- Go to☆36Updated this week
- ☆146Updated 2 years ago
- Fast and accurate gene fusion detection from RNA-Seq data☆232Updated 3 months ago
- WGBS/NOMe-seq Data Processing & Differential Methylation Analysis☆138Updated last year
- Check strandedness of RNA-Seq fastq files☆119Updated 2 years ago
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆260Updated last week
- a lightweight bam file depth statistical tool☆149Updated 5 months ago
- ☆179Updated 7 years ago
- A structural variation pipeline for short-read sequencing☆178Updated this week
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆157Updated 5 months ago
- AmpliconArchitect (AA) is a tool to identify one or more connected genomic regions which have simultaneous copy number amplification and …☆140Updated 7 months ago