ESR-NZ / human_genomics_pipelineLinks
A Snakemake workflow to process single samples or cohorts of Illumina paired-end sequencing data (WGS or WES) using trim galore/bwa/GATK4/parabricks.
☆33Updated 2 years ago
Alternatives and similar repositories for human_genomics_pipeline
Users that are interested in human_genomics_pipeline are comparing it to the libraries listed below
Sorting:
- Lima - Demultiplex Barcoded PacBio Samples☆66Updated 3 months ago
- ☆53Updated 2 years ago
- QDNAseq package for Bioconductor☆50Updated last year
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆63Updated 10 months ago
- ClassifyCNV: a tool for clinical annotation of copy-number variants☆66Updated 2 years ago
- CN-Learn☆30Updated 5 years ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆71Updated last year
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- ⛏ HLA predictions from NGS shotgun data☆54Updated 2 months ago
- Pipeline for annotating genomes using long read transcriptomics data with pinfish☆28Updated 4 years ago
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 6 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 10 months ago
- Tools for processing and analyzing structural variants.☆33Updated 9 years ago
- ENCODE long read RNA-seq pipeline☆50Updated 2 years ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Updated 2 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 6 months ago
- web documentation for Trinotate☆48Updated 2 years ago
- A software for calculating telomere length