A Snakemake workflow to process single samples or cohorts of Illumina paired-end sequencing data (WGS or WES) using trim galore/bwa/GATK4/parabricks.
☆35Jan 13, 2023Updated 3 years ago
Alternatives and similar repositories for human_genomics_pipeline
Users that are interested in human_genomics_pipeline are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- BAMixChecker: A fast and efficient tool for sample matching checkup☆16Jun 12, 2022Updated 4 years ago
- A tool kit to manage many variant on desktop computer☆13Jan 13, 2026Updated 8 months ago
- Bioinformatics with Unix, bash, Make, Python, and parallel☆22Aug 17, 2020Updated 6 years ago
- Pipeline to filter whole exome vcf files and generate a report document for clinical diagnostics.☆14Nov 11, 2019Updated 6 years ago
- SOAP-HLA is a flow of sequencing data analysis pipeline to type all of the HLA genes in IMGT/HLA database using capture sequenced data or…☆10Jun 3, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆13Apr 16, 2026Updated 5 months ago
- This repository contains all CWL descriptions of the MGnify pipeline version 5.0.☆24Apr 21, 2026Updated 5 months ago
- ☆16Jul 9, 2026Updated 2 months ago
- Web-based User Interface to run WDL bioinformatics workflows using Cromwell server☆13Aug 28, 2024Updated 2 years ago
- Official code repository for JAX-CNV☆14Jan 16, 2020Updated 6 years ago
- A general introduction to Python course, with notebooks for student exercises.☆13Mar 25, 2020Updated 6 years ago
- NiPTUNE. A Python library for NIPT analyses.☆11Nov 22, 2021Updated 4 years ago
- SeqWho - A reliable and rapid FASTQ(A) file classifier☆11Jan 21, 2022Updated 4 years ago
- A lightweight and handy variant calling pipeline generator for whole-genome sequencing (WGS) and whole exom sequencing data (WES) analysi…☆146Jun 29, 2026Updated 2 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- This repository houses the code to run SURPI+, a rapid computational pipeline for comprehensive identification of pathogens from clinical…☆44Nov 20, 2019Updated 6 years ago
- ☆18Jul 13, 2021Updated 5 years ago
- The open source version of the Melbourne Genomics Health Alliance Exome Sequencing Pipeline☆33Jan 20, 2018Updated 8 years ago
- phy-mer☆11Oct 12, 2017Updated 8 years ago
- A rust crate providing a vector like struct that stores data as runs of identical values.☆15Feb 19, 2021Updated 5 years ago
- Detect key Units in mosaic Tandem Repeats from representative reads from the same locus☆10Aug 2, 2023Updated 3 years ago
- ☆16May 8, 2023Updated 3 years ago
- ☆32Sep 21, 2023Updated 3 years ago
- The Genome U-Plot is a JavaScript tool to visualize chromosomal abnormalities in the Human Genome using a U-shape layout.☆32Dec 10, 2022Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- The index files for sequence and other data created for the 1000 Genomes project and the International Genome Sample Resource☆47Jul 15, 2019Updated 7 years ago
- An Open Computational Genomics Analysis platform for big data genomics analysis. OpenCGA is maintained and develop by its parent company …☆179May 22, 2026Updated 4 months ago
- Annotate models of genetic inheritance patterns in variant files (vcf files)☆90Aug 18, 2026Updated last month
- A bioinformatics pipeline to analyze mtDNA from NGS data☆98Mar 5, 2024Updated 2 years ago
- Alignment and variant-calling pipeline for Illumina HIV sequences.☆11May 19, 2020Updated 6 years ago
- Generic Interactive Variant Analysis browser☆29Apr 12, 2022Updated 4 years ago
- Snakemake workflow for somatic mutation detection without matched normal samples☆14Mar 4, 2023Updated 3 years ago
- R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…☆17Feb 17, 2021Updated 5 years ago
- Code to go along with https://doi.org/10.1016/j.cell.2022.09.010☆21Mar 16, 2022Updated 4 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Pipeline analysis for whole exome sequencing of pancreatic cancer PDX models☆23Oct 22, 2018Updated 7 years ago
- Reconstruction and analysis of viral and host genomes at multi-organ level☆21Apr 10, 2026Updated 5 months ago
- Copy Number Methods for Detection and Genome Wide Association Tests☆23Nov 4, 2024Updated last year
- A place to collate notes and resources of our journey into porting nanopore sequencing over to accessible, portable technology.☆112May 10, 2024Updated 2 years ago
- Fast, self-contained VCF to MAF converter with embedded annotation (Rust rewrite of vcf2maf)☆25Jun 23, 2026Updated 3 months ago
- ☆12Nov 23, 2020Updated 5 years ago
- ☆19Feb 20, 2018Updated 8 years ago