ShujiaHuang / geneview
Genomics data visualization in Python by using matplotlib.
☆63Updated 10 months ago
Related projects ⓘ
Alternatives and complementary repositories for geneview
- small rna-seq analysis package☆29Updated 2 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆77Updated 9 months ago
- PHAST☆68Updated this week
- TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C☆107Updated 3 years ago
- Helper scripts for biological data processing from Sentieon☆63Updated 3 weeks ago
- Lima - Demultiplex Barcoded PacBio Samples☆65Updated 3 weeks ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆96Updated 2 years ago
- Tip and tricks for BAM files☆84Updated 6 years ago
- Variant Calling Pipeline Using GATK4 and Nextflow☆53Updated last year
- Very simple, pure python, BAM file reader☆79Updated 5 years ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆137Updated 5 months ago
- Same species annotation lift over pipeline.☆96Updated last year
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆66Updated 2 months ago
- Comprehensive benchmark of structural variant callers☆44Updated 3 years ago
- Merging paired-end reads and removing adapters☆45Updated 4 years ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆74Updated last week
- BAM Statistics, Feature Counting and Annotation☆145Updated 3 weeks ago
- FEELnc : FlExible Extraction of LncRNA☆82Updated 2 months ago
- Allele-specific alignment sorting☆53Updated last year
- ☆78Updated 10 years ago
- Powerful statistics for VCF files☆64Updated last year
- Read visualizer for structural variants☆81Updated 6 years ago
- Documenting usage and experience with bioinformatic tools☆40Updated 9 years ago
- Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture…☆79Updated 2 years ago
- Coding Genome Reconstruction using Iso-Seq data☆60Updated 3 years ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆33Updated last year
- Building SuperTranscripts: A linear representation of transcriptome data☆67Updated 3 years ago
- Unsorted scripts for bioinformatics☆59Updated 3 years ago
- ☆111Updated 2 weeks ago