ShujiaHuang / geneviewView external linksLinks
Genomics data visualization in Python by using matplotlib.
☆68Dec 27, 2023Updated 2 years ago
Alternatives and similar repositories for geneview
Users that are interested in geneview are comparing it to the libraries listed below
Sorting:
- ☆10Jun 13, 2020Updated 5 years ago
- A Python package for creating high-quality manhattan and Q-Q plots from GWAS results.☆48Dec 27, 2023Updated 2 years ago
- ☆34Mar 7, 2021Updated 4 years ago
- GWAS SNP Regulatory Analysis Tool☆17Mar 19, 2015Updated 10 years ago
- ☆21Nov 15, 2024Updated last year
- MODAS: Multi-Omics Data Association Study toolkit☆21Nov 21, 2024Updated last year
- A tool set to assess the quality of the per read phasing and reduce the errors.☆13Jun 25, 2020Updated 5 years ago
- Set of script for the paper on the cattle graph genome☆13Jan 10, 2023Updated 3 years ago
- Classes for storing very large GWAS data sets and annotation, and functions for GWAS data cleaning and analysis☆18Mar 18, 2025Updated 10 months ago
- Manhattan plot Generator☆24Jun 1, 2020Updated 5 years ago
- Full GATK SNP calling pipeline☆23Oct 30, 2025Updated 3 months ago
- Repository☆10Oct 23, 2024Updated last year
- The cattle Genotype-Tissue Expression atlas v1☆28Mar 14, 2023Updated 2 years ago
- ☆27May 8, 2022Updated 3 years ago
- Westlake BioBank for Chinese pilot project☆10May 17, 2023Updated 2 years ago
- Code associated with the manuscript "A complete reference genome improves analysis of human genetic variation".☆17Jan 17, 2023Updated 3 years ago
- Characterization of Structural Variation in Chinese samples☆18Dec 22, 2021Updated 4 years ago
- LncADeep is an ab initio lncRNA identification and functional annotation tool based on deep learning☆29Jun 4, 2018Updated 7 years ago
- ☆39Apr 25, 2023Updated 2 years ago
- ☆15Jan 19, 2022Updated 4 years ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Aug 24, 2022Updated 3 years ago
- Bash scripts and data used in pantranscriptomic paper☆24Oct 21, 2022Updated 3 years ago
- My collection of light bioinformatics analysis pipelines for specific tasks☆79May 20, 2024Updated last year
- PLINK reader for Python.☆89May 12, 2025Updated 9 months ago
- ☆20Feb 1, 2026Updated last week
- GWAS QC, PCA, haplotype phasing, genotype imputation☆20Aug 13, 2025Updated 6 months ago
- The Vertebrate Genomes Project Mitogenome Assembly Pipeline☆19Mar 26, 2023Updated 2 years ago
- Bedfile perturbation tool☆17Sep 29, 2025Updated 4 months ago
- ggplot2-based Manhattan plot☆12Oct 18, 2022Updated 3 years ago
- An R package for plotting GWAS results from the GAPIT package☆14Oct 9, 2025Updated 4 months ago
- scripts used for processing and analyzing data in the article.☆13Oct 31, 2019Updated 6 years ago
- This is the repository which contains the code that was used to generate the results and figures of the “Single-cell RNA-sequencing revea…☆12Jun 21, 2024Updated last year
- Code used to process and analyze structural variants and short tandem repeat variants profiled in 719 deeply sequenced whole genomes as p…☆11Jun 25, 2019Updated 6 years ago
- PhenomeXcan: mapping the genome to the phenome through the transcriptome☆11Jun 28, 2020Updated 5 years ago
- Heritability Estimation with high Efficiency using LD and Summary Statistics☆13Feb 14, 2024Updated last year
- Pipeline for multiplex computing of statistical colocalization via COLOC between GWAS and QTL data.☆21Aug 19, 2025Updated 5 months ago
- Methods and recipes for Plant Genome Annotation - Transposable Elements☆20Jun 10, 2025Updated 8 months ago
- Library for indexing VCF files for random access searches by rsID☆17Feb 2, 2026Updated last week
- LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files☆36Jul 5, 2025Updated 7 months ago