ShujiaHuang / geneviewLinks
Genomics data visualization in Python by using matplotlib.
☆68Updated last year
Alternatives and similar repositories for geneview
Users that are interested in geneview are comparing it to the libraries listed below
Sorting:
- ☆89Updated 5 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated 7 months ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 7 years ago
- WISECONDOR (WIthin-SamplE COpy Number aberration DetectOR): Detect fetal trisomies and smaller CNV's in a maternal plasma sample using wh…☆47Updated last year
- CrossMap is a python program to lift over genome coordinates from one genome version to another.☆89Updated last month
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆36Updated 2 years ago
- DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies …☆37Updated 3 years ago
- PHAST☆77Updated last week
- TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C☆113Updated 4 years ago
- Very simple, pure python, BAM file reader☆79Updated 6 years ago
- identifying mutational significance in cancer genomes☆62Updated 3 years ago
- MONOD2 is a toolkit for methylation haplotype analysis of bisulfite sequencing data☆40Updated 6 years ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Updated 3 years ago
- Helper scripts for biological data processing from Sentieon☆64Updated 2 months ago
- New version of JACUSA -> 2.0☆30Updated 2 weeks ago
- Allele-specific alignment sorting☆61Updated 2 years ago
- small rna-seq analysis package☆30Updated 3 years ago
- mtDNA Variant Caller☆35Updated 11 months ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆99Updated last week
- BS-seq analysis pipeline☆45Updated 2 years ago
- FEELnc : FlExible Extraction of LncRNA☆92Updated 4 months ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆99Updated 3 years ago
- ViewBS - a powerful toolkit for visualization of high-throughput bisulfite sequencing data☆86Updated last year
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆32Updated 4 years ago
- Counts the number of reads which map to either the reference or alternate allele at each heterozygous SNP.☆25Updated 7 years ago
- phasing and Allele Specific Expression from RNA-seq☆117Updated last year
- Visualization and annotation of CNVs from population-scale whole-genome sequencing data☆72Updated 7 years ago
- ENCODE long read RNA-seq pipeline☆51Updated 2 years ago