Alternatives and similar repositories for xOAML

Users that are interested in xOAML are comparing it to the libraries listed below

• xuyu-cam / atlas_genetic_scores_omic_traits
  This repository houses scripts for training genetic scores of omic traits in INTERVAL
  ☆25Updated last year
• ruppinlab / tcga-microbiome-prediction
  Predictive models and analysis of cancer prognosis and drug response using primary tumor microbial abundances derived from WGS and RNA-se…
  ☆17Updated 6 months ago
• CNRGH / crimmix
  ☆17Updated 5 years ago
• jingxinfu / TIDEpy
  TIDE (Tumor Immune Dysfunction and Exclusion), a gene expression biomarker to predict the clinical response to immune checkpoint blockade…
  ☆34Updated 2 years ago
• astrazeneca-cgr-publications / PEACOK
  Phenome Exome Association and Correlation Of Key phenotypes
  ☆28Updated 3 years ago
• comp-med / sparse-proteomic-prediction-of-common-and-rare-diseases
  This repository contains code associated with the study "Proteomic signatures improve risk predictions for common and rare diseases" (DOI…
  ☆16Updated 10 months ago
• OSU-BMBL / ssread
  A single-cell and spatial RNA-seq database for Alzheimer’s Disease
  ☆23Updated 10 months ago
• ImmucanWP7 / immucan-scdb
  ☆16Updated last year
• DongqiangZeng0808 / TMEscore
  Calculating Tumor microenvironment score
  ☆29Updated 2 years ago
• TransBioInfoLab / TNBC_analysis
  Code to reproduce TNBC analysis and figures
  ☆23Updated 2 years ago
• YangLabHKUST / MR-APSS
  Mendelian Randomization accounting for Pleiotropy and Sample Structure using genome-wide summary statistics
  ☆42Updated last month
• karthikj89 / scgenetics
  identifying disease critical cell types and programs from single cell RNAseq
  ☆54Updated 2 years ago
• SamGa3 / microbiome_reconstruction
  ☆14Updated last year
• yjgeno / GenKI
  ☆15Updated last year
• Katsevich-Lab / sceptre
  An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.
  ☆30Updated last month
• ChanLab-UTSW / BreastCancer_Integrated
  ☆30Updated 2 months ago
• Gibbsdavidl / Immune-Subtype-Clustering
  This repo contains the code necessary to reproduce the clusters found in "The Immune Landscape of Cancer".
  ☆18Updated 5 years ago
• NCICCGPO / gdan-tmp-models
  Containerized cancer subtype prediction tools for gene expression, miRNA, DNA methylation, somatic mutations and copy number variation.
  ☆24Updated last month
• AndersonHu85 / ccRCC_multiomics
  ☆16Updated last year
• kkang7 / CDSeq_R_Package
  CDSeq R Package
  ☆20Updated 2 years ago
• Zaoqu-Liu / MOFS
  Multimodality Fusion Subtyping (Nature Communications)
  ☆16Updated 3 weeks ago
• hbliu / Kidney_Epi_Pri
  Kidney Epigenome and Transcriptome-based multi-stage Prioritization
  ☆17Updated 2 years ago
• DongqiangZeng0808 / Blasso
  Integrating LASSO and bootstrapping algorithm to find best prognostic or predictive biomarkers
  ☆20Updated 2 years ago
• GerkeLab / TCGAhrd
  Homologous recombination deficiency in TCGA PanCancer Atlas
  ☆27Updated 4 years ago
• MGormley12 / metabolic_trait_hnc_mr
  The effect of metabolic traits on oral and oropharyngeal cancer risk: a Mendelian randomization analysis
  ☆12Updated 2 years ago
• Precancer / SCC
  Immune evasion before tumor invasion in early squamous lung cell carcinogenesis
  ☆16Updated 3 years ago
• gatelabNW / csf_aging
  Single cell transcriptomics reveals cerebrospinal fluid immune dysregulation during healthy brain aging and cognitive impairment
  ☆27Updated last year
• JianYang-Lab / MeDuSA
  MeDuSA is a fine-resolution cellular deconvolution method that leverages scRNA-seq data as a reference to estimate cell-state abundance i…
  ☆43Updated 2 months ago
• segrelabgenomics / TwoSampleMR_pipeline
  Pipeline that runs two-sample Mendelian randomization on molecular QTLs and GWAS loci and tests for horizontal pleiotropy.
  ☆26Updated last year
• YuLab-SMU / tigeR
  🐯 tigeR: Tumor Immunotherapy Gene Expression Data Analysis R package
  ☆33Updated 10 months ago