Fragment binding prediction with ColabFold
☆45Sep 2, 2026Updated this week
Alternatives and similar repositories for FragFold
Users that are interested in FragFold are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆17Oct 30, 2023Updated 2 years ago
- This repository contains code for the paper: "Tertiary motifs as building blocks for the design of protein-binding peptides"☆20Jan 15, 2024Updated 2 years ago
- A deep learning framework for deubiquitnase-substrate interaction identification☆13Jul 31, 2025Updated last year
- Protein-ligand structure prediction☆241Jul 31, 2025Updated last year
- Modelling protein conformational landscape with Alphafold☆61Aug 29, 2025Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- MaSIF-neosurf: surface-based protein design for ternary complexes.☆179Jun 25, 2026Updated 2 months ago
- Deep transformer for predicting interchain residue-residue distances of protein complexes☆14Mar 19, 2024Updated 2 years ago
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆107Apr 24, 2024Updated 2 years ago
- Source code of the paper "Protein Sequence and Structure Co-Design with Equivariant Translation"☆24Sep 18, 2023Updated 2 years ago
- Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions☆176Dec 24, 2023Updated 2 years ago
- Generative diverse protein backbones by protein language model☆35Feb 27, 2026Updated 6 months ago
- repo for DynamicBind: Predicting ligand-specific protein-ligand complex structure with a deep equivariant generative model☆307Dec 23, 2025Updated 8 months ago
- Codebase of paper "Structure Language Models for Protein Conformation Generation" (ICLR'25)☆84May 27, 2026Updated 3 months ago
- Open-source docking pipeline leveraging pairwise statistics☆15Jul 26, 2024Updated 2 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- SE(3)-equivariant point cloud networks for virtual screening☆11Nov 1, 2022Updated 3 years ago
- Machine learning-driven antibody design☆64Jul 5, 2023Updated 3 years ago
- Neural multiclass ab initio reconstruction for cryo-EM.☆13Dec 5, 2024Updated last year
- Scripts to run AlphaFold3, Boltz-2, Chai-1, OpenFold3, Protenix & RF3 with MMseqs2 MSAs and custom templates.☆115Aug 18, 2026Updated 2 weeks ago
- Implementation of FlowSite and HarmonicFlow from the paper "Harmonic Self-Conditioned Flow Matching for Multi-Ligand Docking and Binding …☆107Jul 30, 2024Updated 2 years ago
- Full-Atom Peptide Design based on Multi-modal Flow Matching (ICML 2024)☆112May 25, 2025Updated last year
- ☆417Aug 7, 2024Updated 2 years ago
- ☆16Dec 10, 2024Updated last year
- Graphormer Based Protein Sequence Design☆26Feb 2, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆15Jan 5, 2026Updated 7 months ago
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆59May 6, 2024Updated 2 years ago
- Structure-conditioned masked language modeling for protein sequence design☆74Jan 31, 2024Updated 2 years ago
- Modelling of Large Protein Complexes☆39Aug 8, 2025Updated last year
- Making Protein Design accessible to all via Google Colab!☆937Updated this week
- Deploying synthetic coevolution and machine learning to engineer protein-protein interactions☆17Jul 30, 2023Updated 3 years ago
- ☆121Dec 7, 2022Updated 3 years ago
- Learning Universal Representations of Intermolecular Interactions with ATOMICA☆227Updated this week
- [ICML 2024] Floating Anchor Diffusion Model for Multi-motif Scaffolding☆34Aug 23, 2024Updated 2 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- A conditionally adapted protein language model for the generation of enzymes☆24Nov 26, 2024Updated last year
- In silico directed evolution of peptide binders with AlphaFold☆277Aug 27, 2026Updated last week
- Code for running PottsMPNN to generate sequences and predict energies☆26Aug 4, 2026Updated 3 weeks ago
- Open source code for AlphaFold.☆39May 6, 2026Updated 3 months ago
- Official repo for paper "AlphaFold-Multimer accurately captures interactions and dynamics of intrinsically disordered protein regions"☆17Dec 8, 2024Updated last year
- ☆30Apr 2, 2026Updated 5 months ago
- Demos of many Rosetta applications☆25Jun 10, 2025Updated last year