A python implementation of the Statistical Coupling Analysis (SCA)
☆27Jul 17, 2019Updated 7 years ago
Alternatives and similar repositories for pySCA
Users that are interested in pySCA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A package for protein conformational ensemble analyses based on a differential geometry representation of protein backbones.☆11Apr 26, 2026Updated 4 months ago
- A software research tool for the analysis of structural communication in protein ensembles☆14Mar 24, 2022Updated 4 years ago
- ☆11Apr 25, 2021Updated 5 years ago
- An R package for computing the Quaternary Dot Product Scoring Statistic for signed and unsigned causal graphs.☆10Feb 8, 2019Updated 7 years ago
- Protein scoring and sampling of 'Combinatorial Variant Effects from Structure' (CoVES)☆11Jan 5, 2024Updated 2 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Automated omics-scale protein modeling and simulation setup.☆53Sep 20, 2021Updated 5 years ago
- JAVA framework for accurate SNV assessment☆12Jun 28, 2021Updated 5 years ago
- CLfinder-OrthNet, a pipeline to encode orthologs from multiple genomes and their evolutionary history into networks (OrthNets) based on c…☆10Jun 9, 2022Updated 4 years ago
- iPat allows you to perform GWAS and GS with drags and clicks!☆11Jul 12, 2022Updated 4 years ago
- Convenience functions for VMD-TCL scripting☆14Apr 3, 2026Updated 5 months ago
- SLIP is a sandbox environment for engineering protein sequences with synthetic fitness functions.☆20Jan 17, 2024Updated 2 years ago
- python script to extract jpg images from pdf☆14Sep 18, 2017Updated 9 years ago
- Nextflow pipeline designed for rapid onsite QC and variant calling of Oxford Nanopore data (following basecalling and demultiplexing with…☆13Jun 4, 2026Updated 3 months ago
- Deep learning based prediction of pi-helices in protein sequences☆11Mar 24, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- COMETgazer mehylation analysis software suite☆10Jul 21, 2019Updated 7 years ago
- Freelance bioinformaticians directory☆10Feb 10, 2023Updated 3 years ago
- Python 3 script using COM to convert powerpoint to pdf file☆11Apr 16, 2020Updated 6 years ago
- ChemCharts is a module that allows you to plot chemical space in various figure types☆17Sep 24, 2023Updated 2 years ago
- R package for Empirical Bayes Factor Analysis.☆54Dec 4, 2024Updated last year
- Three ways to query Web of Science/Knowledge☆15Mar 17, 2015Updated 11 years ago
- GeneMiner: a tool for extracting phylogenetic markers from next-generation sequencing data☆11Feb 22, 2024Updated 2 years ago
- emapper-utils: utils for parse emapper result☆10Sep 22, 2020Updated 5 years ago
- Diffusion maps for python☆12Apr 19, 2020Updated 6 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Modeling the effects of mutations in proteins using PyRosetta☆27Jan 26, 2018Updated 8 years ago
- Multi-Task Topological Laplacian deep learning model that predicts binding free energy changes upon mutation☆14Dec 13, 2024Updated last year
- Source code for fitting thermodynamic models (MoCHI), downstream analyses and to reproduce all figures in the following publication: Mapp…☆22Jul 20, 2023Updated 3 years ago
- ☆24Mar 29, 2021Updated 5 years ago
- Mutation effects predicted from sequence co-variation☆75Sep 3, 2017Updated 9 years ago
- Calculate AUC based on GWAS summary statistics only☆10Jun 29, 2018Updated 8 years ago
- Python package for protein sequence-based bidirectional recurrent neural network. Generalizable to a variety of protein bioinformatic app…☆21May 7, 2026Updated 4 months ago
- A Python package for mapping sequence aligned data onto protein structures☆37May 26, 2021Updated 5 years ago
- GO-PCA: An Unsupervised Method to Explore Gene Expression Data Using Prior Knowledge☆15Sep 13, 2017Updated 9 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- pyABC: distributed, likelihood-free inference☆13Jan 26, 2018Updated 8 years ago
- Framework for the rapid modeling glycans and glycoproteins.☆33Sep 29, 2023Updated 2 years ago
- Scripts for calculating RESP charges with Gaussian, starting only with .xyz file of your compound. Generate .mol2, .frcmod and .pdb with …☆10Mar 26, 2019Updated 7 years ago
- This project proposes to contribute to fill the knowledge gap about Covid-19SARS-CoV-2 in Brazil and with the global knowledge about the …☆14Apr 27, 2023Updated 3 years ago
- An R package for displaying binary trees, aiming to represent multiple layers of information on dendrogram leaves.☆15Feb 18, 2026Updated 7 months ago
- Scripts and data for OceanAdapt website to visualize shifts in marine animal distributions☆15Jul 1, 2023Updated 3 years ago
- An extension to the MDAnalysis library providing support for dealing with structural ensembles. There is currently support for calculatin…☆16Jul 20, 2018Updated 8 years ago