A python implementation of the Statistical Coupling Analysis (SCA)
☆27Jul 17, 2019Updated 7 years ago
Alternatives and similar repositories for pySCA
Users that are interested in pySCA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A package for protein conformational ensemble analyses based on a differential geometry representation of protein backbones.☆11Apr 26, 2026Updated 3 months ago
- A software research tool for the analysis of structural communication in protein ensembles☆14Mar 24, 2022Updated 4 years ago
- ☆11Apr 25, 2021Updated 5 years ago
- An R package for computing the Quaternary Dot Product Scoring Statistic for signed and unsigned causal graphs.☆10Feb 8, 2019Updated 7 years ago
- Protein scoring and sampling of 'Combinatorial Variant Effects from Structure' (CoVES)☆11Jan 5, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Automated omics-scale protein modeling and simulation setup.☆53Sep 20, 2021Updated 4 years ago
- JAVA framework for accurate SNV assessment☆12Jun 28, 2021Updated 5 years ago
- Public repository of Google Colab notebooks to use with Phenix☆12Mar 19, 2025Updated last year
- MMTSB Tool Set☆33Jan 26, 2026Updated 6 months ago
- CLfinder-OrthNet, a pipeline to encode orthologs from multiple genomes and their evolutionary history into networks (OrthNets) based on c…☆10Jun 9, 2022Updated 4 years ago
- 🏍️ - JAX-based framework to model biological systems☆17Jun 21, 2026Updated last month
- This is a curated list of tutorials, projects, libraries, videos, papers, books and anything related to applications of Deep Learning to …☆16Sep 7, 2025Updated 11 months ago
- Convenience functions for VMD-TCL scripting☆14Apr 3, 2026Updated 4 months ago
- SLIP is a sandbox environment for engineering protein sequences with synthetic fitness functions.☆20Jan 17, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- OMEGA code described in "Scalable and cost-efficient custom gene library assembly from oligopools."☆42Nov 18, 2025Updated 8 months ago
- python script to extract jpg images from pdf☆14Sep 18, 2017Updated 8 years ago
- Nextflow pipeline designed for rapid onsite QC and variant calling of Oxford Nanopore data (following basecalling and demultiplexing with…☆13Jun 4, 2026Updated 2 months ago
- Deep learning based prediction of pi-helices in protein sequences☆11Mar 24, 2023Updated 3 years ago
- COMETgazer mehylation analysis software suite☆10Jul 21, 2019Updated 7 years ago
- Freelance bioinformaticians directory☆10Feb 10, 2023Updated 3 years ago
- A multiple alignment analyser☆21Jul 30, 2026Updated last week
- MRtree R implementation☆14Mar 1, 2023Updated 3 years ago
- R package for Empirical Bayes Factor Analysis.☆54Dec 4, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- GeneMiner: a tool for extracting phylogenetic markers from next-generation sequencing data☆11Feb 22, 2024Updated 2 years ago
- A script for automating startup of a jupyter server on compute note - from you local machine.☆15Mar 6, 2024Updated 2 years ago
- Download NCBI assembly genomes with ftp. rsync, ascp☆12Aug 2, 2022Updated 4 years ago
- 📓 Manage your notes & tasks in a tidy and fancy way. A taskbook clone written in Python.☆11Oct 12, 2024Updated last year
- ☆90Nov 18, 2025Updated 8 months ago
- Entropy from PDB conformational ensembles☆13Mar 28, 2024Updated 2 years ago
- Diffusion maps for python☆12Apr 19, 2020Updated 6 years ago
- Modeling the effects of mutations in proteins using PyRosetta☆27Jan 26, 2018Updated 8 years ago
- Multi-Task Topological Laplacian deep learning model that predicts binding free energy changes upon mutation☆13Dec 13, 2024Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- R code for writing Beast2 XML (especially morphology/tip-dating)☆11Jun 26, 2024Updated 2 years ago
- Mutation effects predicted from sequence co-variation☆76Sep 3, 2017Updated 8 years ago
- Calculate AUC based on GWAS summary statistics only☆10Jun 29, 2018Updated 8 years ago
- Python package for protein sequence-based bidirectional recurrent neural network. Generalizable to a variety of protein bioinformatic app…☆21May 7, 2026Updated 3 months ago
- A Python package for mapping sequence aligned data onto protein structures☆37May 26, 2021Updated 5 years ago
- GO-PCA: An Unsupervised Method to Explore Gene Expression Data Using Prior Knowledge☆15Sep 13, 2017Updated 8 years ago
- pyABC: distributed, likelihood-free inference☆13Jan 26, 2018Updated 8 years ago