Alternatives and similar repositories for pySCA

Users that are interested in pySCA are comparing it to the libraries listed below

• SBRG / ssbio
  A Python framework for structural systems biology
  ☆109Updated 4 years ago
• debbiemarkslab / EVmutation
  Mutation effects predicted from sequence co-variation
  ☆70Updated 8 years ago
• gecrooks / weblogo
  WebLogo 3: Sequence Logos redrawn
  ☆152Updated 5 months ago
• hsalis / SalisLabCode
  Models, design algorithms, and other software related to Salis lab publications
  ☆35Updated 11 months ago
• davidhoover / DNAWorks
  Automatic oligonucleotide design for PCR-based gene synthesis
  ☆47Updated 6 years ago
• debbiemarkslab / plmc
  Inference of couplings in proteins and RNAs from sequence variation
  ☆113Updated 2 years ago
• moshi4 / pyMSAviz
  MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
  ☆156Updated 11 months ago
• UCLOrengoGroup / cath-tools
  Protein structure comparison tools such as SSAP and SNAP
  ☆66Updated last year
• r2dt-bio / R2DT
  Visualise RNA secondary structure in consistent, reproducible and recognisable layouts
  ☆75Updated 3 months ago
• mmagnus / rna-tools
  🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs …
  ☆178Updated 3 months ago
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆94Updated 2 years ago
• jafetgado / PyCanal
  Conservation analysis of homologous proteins with Python
  ☆12Updated 4 years ago
• klamt-lab / straindesign
  StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy
  ☆46Updated 2 months ago
• ViennaRNA / forna
  Create force-directed graphs of RNA secondary structures.
  ☆108Updated 5 years ago
• Merck / deepbgc
  BGC Detection and Classification Using Deep Learning
  ☆154Updated last year
• DessimozLab / fold_tree
  snakemake pipeline for creating trees from sequence sets
  ☆91Updated last week
• TurtleTools / caretta
  A software-suite to perform multiple protein structure alignment and structure feature extraction.
  ☆31Updated 2 years ago
• andrewguy / biostructmap
  A Python package for mapping sequence aligned data onto protein structures
  ☆36Updated 4 years ago
• Benjamin-Lee / CodonAdaptationIndex
  Python Implementation of Codon Adaption Index
  ☆37Updated 2 years ago
• nf-core / proteinfold
  Protein 3D structure prediction pipeline
  ☆86Updated last week
• dincarnato / RNAFramework
  RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis
  ☆42Updated last week
• psipred / psipred
  PSIPRED Protein Secondary Structure Predictor
  ☆58Updated 3 months ago
• pstjohn / d3flux
  D3.js based visualizations of cobrapy metabolic models
  ☆47Updated 5 years ago
• ViennaRNA / forgi
  An RNA manipulation library.
  ☆56Updated last year
• brineylab / abstar
  VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.
  ☆43Updated 2 months ago
• fteufel / signalp-6.0
  Multi-class signal peptide prediction and structure decoding model.
  ☆96Updated 8 months ago
• ELELAB / mutatex
  scripts and facilities for in-silico mutagenesis with FoldX
  ☆61Updated 3 months ago
• eternagame / draw_rna
  Draw RNA secondary structures in python.
  ☆49Updated 4 months ago
• ebi-jdispatcher / webservice-clients
  A collection of Web Service Clients to consume EBI's Job Dispatcher tools via REST APIs
  ☆54Updated last year
• BernhoferM / TMbed
  Transmembrane proteins predicted through Language Model embeddings
  ☆39Updated 3 months ago