reynoldsk / pySCA
A python implementation of the Statistical Coupling Analysis (SCA)
☆25Updated 5 years ago
Alternatives and similar repositories for pySCA
Users that are interested in pySCA are comparing it to the libraries listed below
Sorting:
- Models, design algorithms, and other software related to Salis lab publications☆32Updated 6 months ago
- Protein structure comparison tools such as SSAP and SNAP☆63Updated last year
- Mutation effects predicted from sequence co-variation☆65Updated 7 years ago
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆38Updated last month
- MSA(Multiple Sequence Alignment) visualization python package for sequence analysis☆125Updated 5 months ago
- Automatic oligonucleotide design for PCR-based gene synthesis☆44Updated 5 years ago
- software for the analysis and visualization of deep mutational scanning data☆34Updated 2 years ago
- A Python package for mapping sequence aligned data onto protein structures☆35Updated 3 years ago
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆72Updated last week
- A collection of Web Service Clients to consume EBI's Job Dispatcher tools via REST APIs☆52Updated 9 months ago
- snakemake pipeline for creating trees from sequence sets☆76Updated 2 weeks ago
- Degenerate Codon Design☆13Updated 5 years ago
- Conservation analysis of homologous proteins with Python☆10Updated 3 years ago
- Inference of couplings in proteins and RNAs from sequence variation☆108Updated 2 years ago
- A Python framework for structural systems biology☆107Updated 4 years ago
- Tool for deep mutational scanning experiments.☆49Updated 2 months ago
- Immunoglobulin and T-Cell receptor rearrangement software☆48Updated last year
- Python package and command line tool for epitope prediction☆51Updated 9 months ago
- An RNA manipulation library.☆56Updated last year
- Protein 3D structure prediction pipeline☆79Updated this week
- A high-fidelity E. coli RNA-seq compendium☆32Updated 4 years ago
- Multi-class signal peptide prediction and structure decoding model.☆84Updated 3 months ago
- Comprehensive Python client for the Uniprot REST API☆49Updated 8 months ago
- Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies☆57Updated last month
- Evolutionary velocity with protein language models☆90Updated last year
- A PCR primer tool for DNA assembly flows☆32Updated last year
- An error model and pipeline for analyzing deep mutational scanning (DMS) data and diagnosing common experimental pathologies☆31Updated 3 weeks ago
- Python framework for doing ancestral sequence reconstruction☆38Updated 10 months ago
- Python Implementation of Codon Adaption Index☆37Updated 2 years ago
- retrieve protein sequence identifiers and metadata from http://uniprot.org☆67Updated 3 years ago