Alternatives and similar repositories for cellscape

Users that are interested in cellscape are comparing it to the libraries listed below

• r2dt-bio / R2DT
  Visualise RNA secondary structure in consistent, reproducible and recognisable layouts
  ☆72Updated last month
• Rostlab / ConSurf
  Evolutionary conservation estimation of residues or nucleotides
  ☆42Updated 3 years ago
• multimeric / Unipressed
  Comprehensive Python client for the Uniprot REST API
  ☆49Updated 9 months ago
• cusbg / traveler
  Template-based RNA secondary structure visualization
  ☆26Updated 6 months ago
• yachielab / QUEEN
  QUEEN: a framework to generate quinable and efficiently editable nucleotide sequence resources
  ☆43Updated 2 weeks ago
• MPI-Dortmund / pymissense
  PyMissense creates the pathogenicity plot and modified pdb as shown in the AlphaMissense paper for custom proteins.
  ☆23Updated last year
• andrewguy / biostructmap
  A Python package for mapping sequence aligned data onto protein structures
  ☆35Updated 4 years ago
• dincarnato / RNAFramework
  RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis
  ☆38Updated this week
• ncbi / SSDraw
  ☆85Updated last year
• Lattice-Automation / primers
  A PCR primer tool for DNA assembly flows
  ☆32Updated last year
• PayneLab / ProteomicsEducation
  ☆33Updated last week
• SBRG / precise-db
  A high-fidelity E. coli RNA-seq compendium
  ☆32Updated 4 years ago
• harmslab / topiary
  Python framework for doing ancestral sequence reconstruction
  ☆38Updated 10 months ago
• SBRG / pymodulon
  Python package for analyzing and visualizing iModulons
  ☆13Updated 2 months ago
• lehner-lab / DiMSum
  An error model and pipeline for analyzing deep mutational scanning (DMS) data and diagnosing common experimental pathologies
  ☆32Updated last month
• CongLabCode / DPAM
  A domain parser for Alphafold models
  ☆38Updated last year
• ponnhide / sangerseq_viewer
  sangerseq_viewer is a python package to automatically visualize Sanger sequencing results and the corresponding annotated sequence map.
  ☆35Updated last year
• FowlerLab / Enrich2
  Tool for deep mutational scanning experiments.
  ☆51Updated 2 months ago
• nmatzke / 3diphy
  Maximum likelihood structural phylogenetics by including Foldseek 3Di characters. Supporting Information for Puente-Lelievre et al. 2023n…
  ☆21Updated last month
• ELELAB / mutatex
  scripts and facilities for in-silico mutagenesis with FoldX
  ☆56Updated 5 months ago
• chayan7 / flashfold
  A tool for protein and protein complex structure prediction.
  ☆28Updated last week
• moshi4 / pyMSAviz
  MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
  ☆130Updated 6 months ago
• nf-core / proteinfold
  Protein 3D structure prediction pipeline
  ☆80Updated this week
• davidhoover / DNAWorks
  Automatic oligonucleotide design for PCR-based gene synthesis
  ☆46Updated 5 years ago
• MIDIfactory / AlphaFastPPi
  Fast AlphaFold-Multimer based pipeline for Protein-Protein Interaction (PPI) screening
  ☆38Updated 8 months ago
• seqeralabs / nf-chai
  POC Nextflow pipeline to run the Chai-1, SOTA model for biomolecular structure prediction
  ☆11Updated 4 months ago
• hgbrian / biocolabs
  a collection of colabs useful for molecular biology
  ☆30Updated last year
• psipred / merizo_search
  Fast protein domain structure embedding+search tool
  ☆21Updated 2 weeks ago
• Pharmaco-OmicsLab / EasyPubPlot
  Shiny app to easily create publishable plots for scientific papers
  ☆34Updated 2 months ago
• ulo / Protter
  a customizable protein feature visualization tool
  ☆13Updated 2 years ago