ylaboratory / gene-embedding-benchmarksLinks
Benchmarking gene embeddings on single, paired, and gene set tasks
☆13Updated 3 weeks ago
Alternatives and similar repositories for gene-embedding-benchmarks
Users that are interested in gene-embedding-benchmarks are comparing it to the libraries listed below
Sorting:
- Functional Embedding of Gene Signatures☆46Updated last year
- ☆21Updated 5 months ago
- ☆38Updated last year
- a framework for predicting global protein-protein interaction networks from dynamic mass spec data☆24Updated last year
- Pipeline for assessing the tractability of potential targets (starting from Gene IDs)☆27Updated 6 months ago
- ☆39Updated last month
- accurate prediction of promoter activity and variant effects from massive parallel reporter assays☆39Updated last month
- Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …☆35Updated 5 months ago
- Examples for gget (https://github.com/pachterlab/gget).☆38Updated 3 months ago
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Updated 3 years ago
- Comprehensive Python client for the Uniprot REST API☆51Updated 2 months ago
- Knowledge-primed neural networks☆38Updated 2 years ago
- GO2Sum is a deep learning based summarizer that generates human-readable summaries for GO term annotations made by protein function predi…☆16Updated last year
- TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…☆25Updated 2 years ago
- Comparing performance across many methodological dimensions among tools that predict RNA after TF knockdowns and overexpression.☆19Updated 2 weeks ago
- HLA-II ligand predictor.☆44Updated 2 years ago
- Flexible analysis of high-content CRISPR screening☆31Updated last week
- CDR3 clustering module providing a new method for fast and accurate clustering of large data sets of CDR3 amino acid sequences, and offer…☆55Updated last year
- ☆13Updated last month
- ☆27Updated 4 months ago
- Toolkit for training hyenaDNA-based autoregressive language models on DNA sequences.☆47Updated 10 months ago
- Absolve antibody variable domain sequence analysis☆18Updated 6 years ago
- ☆37Updated 3 months ago
- Computational Optimization of DNA Activity (CODA)☆60Updated 4 months ago
- Python package for analyzing and visualizing iModulons☆13Updated 2 weeks ago
- ☆73Updated this week
- A network based gene classification library to generate genome wide predictions about genes that are functionally similar to the input ge…☆20Updated 2 weeks ago
- Generalizable AI predicts immunotherapy outcomes across cancers and treatments☆37Updated this week
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …☆51Updated 3 months ago
- Biological Network Integration using Convolutions☆62Updated last year