xopat.org - digital pathology viewing framework
☆32Oct 27, 2026Updated this week
Alternatives and similar repositories for xopat
Users that are interested in xopat are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Fast Whole-slide image Annotation Tool (FWAT) for conducting painless studies requiring annotations on whole-slide images.☆11Jun 22, 2018Updated 8 years ago
- OpenSeadragon filtering plugin☆46Mar 5, 2024Updated 2 years ago
- Open source whole slide image preparation and viewing pipeline☆14Mar 16, 2020Updated 6 years ago
- An open-source, web-based viewer for zoomable images, implemented in pure JavaScript.☆14Updated this week
- The official deployment of the Digital Slide Archive and HistomicsTK.☆140Oct 23, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- convert .kfb format whole slide images to .svs format image for further processing☆18Sep 19, 2020Updated 6 years ago
- An OpenSeadragon plugin that adds HTML overlay capability.☆14Oct 28, 2022Updated 4 years ago
- fabricjs canvas overlay for openseadragon☆74Jan 29, 2022Updated 4 years ago
- ☆30Dec 19, 2025Updated 10 months ago
- Python scripts for tracking cells in fluorescent microscopy.☆11Dec 10, 2017Updated 8 years ago
- Python wrapper library for PMA.start, a universal viewier for whole slide imaging and microscopy☆33Oct 13, 2026Updated 2 weeks ago
- Color Deconvolution for quantification of histological staining☆12Dec 18, 2018Updated 7 years ago
- An open source online platform for collaborative image labeling of almost everything☆65Updated this week
- An integrated Pathology Image (a.k.a. Whole-slide image) reading library.☆83Sep 29, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆22May 8, 2023Updated 3 years ago
- OpenSeadragon scalebar plugin☆42Jun 17, 2026Updated 4 months ago
- A web platform for collaborative analysis of very large bio-medical images☆27Updated this week
- An automated Endometrial Cancer Diagnosis approach using Histopathological Image through image Preprocessing and Optimized gated Multi-La…☆11Jan 26, 2025Updated last year
- The official implementation of GPFM☆133Mar 11, 2026Updated 7 months ago
- Create API client for your React app with just one line of code, using React Query!☆14May 21, 2024Updated 2 years ago
- Digital pathology image viewer with support for human/machine generated annotations and markups.☆293Aug 19, 2026Updated 2 months ago
- Bio-Formats image file format to raw format converter☆115Oct 22, 2026Updated last week
- Robust quad-tree based registration on whole slide images☆20Apr 2, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A Pythonista utility (meant to be put in the action menu) that allows you to add a home screen icon for any script☆11Dec 22, 2014Updated 11 years ago
- Contour maps plugin for MapLibreGL JS☆16Oct 28, 2024Updated 2 years ago
- PrePATH: A parallel toolkit for Preprocessing WSI☆60Mar 27, 2026Updated 7 months ago
- Rendering and Comparison (hillshade, contours, hypso) of Global TerrainRGB, Terrarium and COG terrain DEM/DSM/DTM open-data sources based…☆22Updated this week
- The official repo of "A Multimodal Knowledge-enhanced Whole-slide Pathology Foundation Model"☆52May 1, 2026Updated 5 months ago
- Run TFLITE models on the web☆13Jan 2, 2022Updated 4 years ago
- Visual Studio Code extension to change the font size with keyboard shortcuts☆10Feb 8, 2020Updated 6 years ago
- 3-day workshop to teach biologists how to train and process deep convolutional neural networks for image segmentation through a comprehen…☆13May 30, 2022Updated 4 years ago
- QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/☆29Dec 3, 2025Updated 10 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A Python toolkit for pathology image analysis algorithms.☆491Oct 22, 2026Updated last week
- Restore a damaged (truncated) mp4, m4v, mov, 3gp video. Provided you have a similar not broken video.☆10May 2, 2026Updated 5 months ago
- Python package for conversions between ENSEMBL IDs and gene names (annotables + pyensembl)☆12Feb 2, 2026Updated 8 months ago
- Toolkit to help develop and run QuPath scripts from Eclipse and other IDEs, including over remote connections. (See README.md for more in…☆17Aug 19, 2020Updated 6 years ago
- detection of glomeruli using faster rcnn☆12Nov 22, 2019Updated 6 years ago
- Python script to comvert Philips iSyntax files to OME-TIFF☆14Dec 30, 2022Updated 3 years ago
- ☆31Jul 3, 2026Updated 3 months ago