Alternatives and similar repositories for xopat

Users that are interested in xopat are comparing it to the libraries listed below

• John-P / wsic
  Whole Slide image (WSI) conversion for brightfield histology images
  ☆37Updated this week
• choosehappy / QuickAnnotator
  An open-source digital pathology based rapid image annotation tool
  ☆78Updated last week
• DigitalSlideArchive / HistomicsUI
  A Girder plugin for pathology image annotations and analysis.
  ☆72Updated last week
• bgilbert / anonymize-slide
  Delete the label from a whole-slide image
  ☆65Updated 4 years ago
• qupath / qupath-extension-wsinfer
  QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/
  ☆24Updated this week
• SarderLab / Histo-cloud
  ☆21Updated 3 months ago
• pearcetm / svs-deidentifier
  Strip potentially identifying label and macro images from Aperio SVS whole slide image files
  ☆32Updated last year
• DigitalSlideArchive / digital_slide_archive
  The official deployment of the Digital Slide Archive and HistomicsTK.
  ☆124Updated this week
• DigitalSlideArchive / DSA-WSI-DeID
  A workflow for redacting PHI from whole slide images (WSI) based on the Digital Slide Archive.
  ☆17Updated last week
• cpath-ukk / grandqc
  GrandQC tool for tissue detection and quality control in pathology
  ☆49Updated 3 months ago
• daangeijs / simple_wsi_viewer
  A simple web application for for viewing and navigating pathology whole-slide-images in your browser.
  ☆13Updated last year
• SBU-BMI / wsinfer
  🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images
  ☆71Updated 11 months ago
• MaryamHaghighat / PathProfiler
  Pipeline for computational pathology
  ☆35Updated last year
• MathOnco / valis
  Virtual Alignment of pathoLogy Image Series
  ☆163Updated this week
• smujiang / Re-stained_WSIs_Registration
  Re-stained whole slide image alignment
  ☆33Updated last year
• ksugar / qupath-extension-sam
  QuPath extension for Segment Anything Model (SAM)
  ☆109Updated 3 months ago
• Bayer-Group / tiffslide
  TiffSlide - cloud native openslide-python replacement based on tifffile
  ☆103Updated 3 weeks ago
• choosehappy / PatchSorter
  A tool for rapidly labeling objects using deep learning feature embedding
  ☆32Updated 10 months ago
• labsyspharm / scope2screen
  Scope2Screen is an open-source web-application for focus+context exploration and annotation of whole-slide, high-plex, tissue images.
  ☆16Updated 2 years ago
• sebastianffx / stainlib
  Python 3 library for the augmentation & normalization of H&E images
  ☆56Updated 2 years ago
• andreped / NoCodeSeg
  🔬 Code-free deep segmentation for computational pathology
  ☆53Updated last year
• manzt / napari-lazy-openslide
  Lazily load multiscale whole-slide images with openslide and dask
  ☆33Updated 2 years ago
• labsyspharm / palom
  Piecewise alignment for layers of mosaics
  ☆25Updated last month
• choosehappy / QuPathGeoJSONImportExport
  Coincides with blogpost for using geojson and shapely
  ☆32Updated 4 years ago
• arjvik / QuPath-Scripting-Tools
  Toolkit to help develop and run QuPath scripts from Eclipse and other IDEs, including over remote connections. (See README.md for more in…
  ☆17Updated 4 years ago
• Pathomation / pma_python
  Python wrapper library for PMA.start, a universal viewier for whole slide imaging and microscopy
  ☆30Updated 6 months ago
• mstritt / orbit-image-analysis
  A versatile image analysis software for biological image-based quantification using machine learning, especially for whole slide imaging.
  ☆60Updated 4 years ago
• HistoCleanQUB / HistoClean
  HistoClean is a tool for the preprocessing and augmentation of images used in deep learning models. This easy to use application brings…
  ☆29Updated 3 years ago
• simongraham / hovernet_inference
  HoVer-Net inference code for simultaneous nuclear segmentation and classification
  ☆68Updated 2 years ago
• NHPatterson / wsireg
  multimodal whole slide image registration in a graph structure
  ☆87Updated 11 months ago