RationAI / xopatLinks
Histopatholical visualization toolkit based on OpenSeaDragon.
☆29Updated last week
Alternatives and similar repositories for xopat
Users that are interested in xopat are comparing it to the libraries listed below
Sorting:
- The official deployment of the Digital Slide Archive and HistomicsTK.☆133Updated this week
- A Girder plugin for pathology image annotations and analysis.☆79Updated 3 weeks ago
- A whole-slide image reader for TensorFlow☆24Updated 2 months ago
- Delete the label from a whole-slide image☆65Updated 4 years ago
- Whole Slide image (WSI) conversion for brightfield histology images☆37Updated 3 weeks ago
- Coincides with blogpost for using geojson and shapely☆33Updated 5 years ago
- An open-source digital pathology based rapid image annotation tool☆90Updated last week
- ☆73Updated 3 weeks ago
- QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/☆28Updated 2 months ago
- 🔬 Code-free deep segmentation for computational pathology☆56Updated last year
- Python wrapper library for PMA.start, a universal viewier for whole slide imaging and microscopy☆33Updated last week
- A simple web application for for viewing and navigating pathology whole-slide-images in your browser.☆16Updated 2 years ago
- ☆21Updated last month
- ⚡ Open-source software for deep learning-based digital pathology☆141Updated last year
- TiffSlide - cloud native openslide-python replacement based on tifffile☆104Updated 8 months ago
- Strip potentially identifying label and macro images from Aperio SVS whole slide image files☆37Updated last year
- Python package for reading DICOM WSI file sets.☆47Updated last month
- A tool for rapidly labeling objects using deep learning feature embedding☆34Updated 5 months ago
- A versatile image analysis software for biological image-based quantification using machine learning, especially for whole slide imaging.☆59Updated 4 years ago
- Python library for converting WSI files to DICOM☆81Updated 2 months ago
- 🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images☆84Updated last year
- Trained models for use with QuPath☆16Updated 4 years ago
- QuPath extension for Segment Anything Model (SAM)☆126Updated this week
- An open-source, web-based viewer for zoomable images, implemented in pure JavaScript.☆14Updated 9 months ago
- Re-stained whole slide image alignment☆36Updated 2 years ago
- PAthological QUpath Obsession - QuPath and Python conversations☆133Updated 5 months ago
- A Python library for deep learning on whole-slide images☆52Updated 4 years ago
- ☆24Updated 2 years ago
- Python 3 library for the augmentation & normalization of H&E images☆64Updated 3 years ago
- Pipeline for computational pathology☆37Updated 2 years ago