RationAI / xopatLinks
Histopatholical visualization toolkit based on OpenSeaDragon.
☆29Updated this week
Alternatives and similar repositories for xopat
Users that are interested in xopat are comparing it to the libraries listed below
Sorting:
- A Girder plugin for pathology image annotations and analysis.☆74Updated this week
- The official deployment of the Digital Slide Archive and HistomicsTK.☆127Updated last week
- Python wrapper library for PMA.start, a universal viewier for whole slide imaging and microscopy☆32Updated 8 months ago
- Delete the label from a whole-slide image☆65Updated 4 years ago
- ☆21Updated 6 months ago
- ☆71Updated 2 weeks ago
- An open-source digital pathology based rapid image annotation tool☆82Updated last month
- TiffSlide - cloud native openslide-python replacement based on tifffile☆103Updated 3 months ago
- A whole-slide image reader for TensorFlow☆24Updated 2 weeks ago
- Whole Slide image (WSI) conversion for brightfield histology images☆36Updated 2 weeks ago
- 🔬 Code-free deep segmentation for computational pathology☆55Updated last year
- Python package for reading DICOM WSI file sets.☆44Updated this week
- A tool for rapidly labeling objects using deep learning feature embedding☆33Updated this week
- A simple web application for for viewing and navigating pathology whole-slide-images in your browser.☆15Updated last year
- Coincides with blogpost for using geojson and shapely☆33Updated 4 years ago
- ⚡ Open-source software for deep learning-based digital pathology☆135Updated last year
- GrandQC tool for tissue detection and quality control in pathology☆61Updated 5 months ago
- 🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images☆79Updated last year
- PAthological QUpath Obsession - QuPath and Python conversations☆121Updated 8 months ago
- Interoperable web-based DICOM slide microscopy viewer and annotation tool☆141Updated last week
- QuPath extension for Segment Anything Model (SAM)☆117Updated last month
- A workflow for redacting PHI from whole slide images (WSI) based on the Digital Slide Archive.☆17Updated last week
- Quality control of whole-slide images through multi-class semantic segmentation of artifacts☆36Updated last year
- FalseColor Python is a rapid digital staining module designed for translating two-channel fluorescence images (i.e. a nuclear and cytopla…☆30Updated 4 years ago
- Bio-Formats image file format to raw format converter☆96Updated this week
- ☆19Updated 2 months ago
- QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/☆24Updated last month
- Python 3 library for the augmentation & normalization of H&E images☆58Updated 2 years ago
- Intelligent data partitioning using quality control metrics☆18Updated 2 months ago
- Re-stained whole slide image alignment☆35Updated last year