RationAI / xopat

Related projects ⓘ

Alternatives and complementary repositories for xopat

• SarderLab / Histo-cloud
  ☆19Updated last year
• DigitalSlideArchive / HistomicsUI
  A Girder plugin for pathology image annotations and analysis.
  ☆57Updated this week
• choosehappy / QuickAnnotator
  An open-source digital pathology based rapid image annotation tool
  ☆74Updated this week
• michaellee1 / CellSeg
  ☆21Updated last year
• DigitalSlideArchive / digital_slide_archive
  The official deployment of the Digital Slide Archive and HistomicsTK.
  ☆110Updated last week
• clij / clupath
  GPU-accelerated image processing in QuPath
  ☆15Updated 3 years ago
• bgilbert / anonymize-slide
  Delete the label from a whole-slide image
  ☆58Updated 3 years ago
• ChristianMarzahl / WsiRegistration
  Robust quad-tree based registration on whole slide images
  ☆19Updated 5 months ago
• manzt / napari-lazy-openslide
  Lazily load multiscale whole-slide images with openslide and dask
  ☆33Updated last year
• DigitalSlideArchive / DSA-WSI-DeID
  A workflow for redacting PHI from whole slide images (WSI) based on the Digital Slide Archive.
  ☆15Updated last month
• imi-bigpicture / wsidicom
  Python package for reading DICOM WSI file sets.
  ☆34Updated this week
• TissUUmaps / TissUUmaps
  TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…
  ☆45Updated 3 weeks ago
• qupath / qupath-extension-wsinfer
  QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/
  ☆22Updated 2 months ago
• AndrewNorgan / wsi
  Open source whole slide image preparation and viewing pipeline
  ☆12Updated 4 years ago
• daangeijs / simple_wsi_viewer
  A simple web application for for viewing and navigating pathology whole-slide-images in your browser.
  ☆13Updated last year
• John-P / wsic
  Whole Slide image (WSI) conversion for brightfield histology images
  ☆33Updated this week
• mstritt / orbit-image-analysis
  A versatile image analysis software for biological image-based quantification using machine learning, especially for whole slide imaging.
  ☆61Updated 3 years ago
• SBU-BMI / wsinfer
  🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images
  ☆59Updated 4 months ago
• PathologyDataScience / HistomicsML2
  A tool for training machine-learning models with whole-slide imaging datasets
  ☆22Updated 10 months ago
• serrob23 / falsecolor
  FalseColor Python is a rapid digital staining module designed for translating two-channel fluorescence images (i.e. a nuclear and cytopla…
  ☆29Updated 3 years ago
• imi-bigpicture / wsidicomizer
  Python library for converting WSI files to DICOM
  ☆61Updated 2 weeks ago
• Bayer-Group / tiffslide
  TiffSlide - cloud native openslide-python replacement based on tifffile
  ☆85Updated 9 months ago
• andreped / NoCodeSeg
  🔬 Code-free deep segmentation for computational pathology
  ☆52Updated 5 months ago
• maragraziani / interpretAI_DigiPath
  Hands-on Sessions 1 and 2 at the Building Interpretable AI for Digital Pathology AMLD workshop 2021
  ☆21Updated 3 years ago
• MarkZaidi / QuASI
  List of QuPath scripts for alignment and stain deconvolution of whole-slide histology images
  ☆24Updated last year
• pearcetm / svs-deidentifier
  Strip potentially identifying label and macro images from Aperio SVS whole slide image files
  ☆26Updated 6 months ago
• choosehappy / QuPathGeoJSONImportExport
  Coincides with blogpost for using geojson and shapely
  ☆29Updated 4 years ago
• labsyspharm / orion-crc
  ☆12Updated 7 months ago
• Pathomation / pma_python
  Python wrapper library for PMA.start, a universal viewier for whole slide imaging and microscopy
  ☆29Updated 6 months ago
• Booritas / slideio
  ☆60Updated this week