Alternatives and similar repositories for PatchSorter

Users that are interested in PatchSorter are comparing it to the libraries listed below

• SBU-BMI / wsinfer
  🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images
  ☆73Updated last year
• sebastianffx / stainlib
  Python 3 library for the augmentation & normalization of H&E images
  ☆57Updated 2 years ago
• cpath-ukk / grandqc
  GrandQC tool for tissue detection and quality control in pathology
  ☆53Updated 4 months ago
• MaryamHaghighat / PathProfiler
  Pipeline for computational pathology
  ☆38Updated last year
• qupath / qupath-extension-wsinfer
  QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/
  ☆24Updated 2 weeks ago
• markowetzlab / pathml
  A Python library for deep learning on whole-slide images
  ☆53Updated 3 years ago
• mahmoodlab / TriPath
  Analysis of 3D pathology samples using weakly supervised AI - Cell
  ☆102Updated 5 months ago
• impromptuRong / hd_wsi
  ☆34Updated 3 months ago
• KatherLab / STAMP
  Solid Tumor Associative Modeling in Pathology
  ☆81Updated this week
• choosehappy / QuickAnnotator
  An open-source digital pathology based rapid image annotation tool
  ☆79Updated last week
• huangzhii / IMPRESS
  ☆20Updated 2 years ago
• John-P / wsic
  Whole Slide image (WSI) conversion for brightfield histology images
  ☆37Updated 3 weeks ago
• DIAGNijmegen / pathology-whole-slide-data
  A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.
  ☆104Updated 7 months ago
• andreped / NoCodeSeg
  🔬 Code-free deep segmentation for computational pathology
  ☆53Updated last year
• secrierlab / HistoMIL
  A Python package for handling histopathology whole-slide images using multiple instance learning (MIL) techniques.
  ☆30Updated last year
• choosehappy / HoverFast
  Blazing fast nuclei segmentation for brightfield Whole Slide Images
  ☆36Updated 5 months ago
• peng-lab / HistoBistro
  Weakly-supervised learning pipeline for histopathology images. Publications: Biomarker prediction in colorectal cancer (CRC)
  ☆80Updated last year
• DIAGNijmegen / pathology-artifact-detection
  Quality control of whole-slide images through multi-class semantic segmentation of artifacts
  ☆34Updated last year
• kmboehm / orpheus
  ☆14Updated 5 months ago
• KatherLab / marugoto
  Tools to build deep learning pipelines.
  ☆104Updated 8 months ago
• BiomedicalMachineLearning / HEMnet
  A neural network software for using Molecular labelling to improve pathological annotation of H and E tissues
  ☆32Updated 5 months ago
• choosehappy / QuPathGeoJSONImportExport
  Coincides with blogpost for using geojson and shapely
  ☆32Updated 4 years ago
• DeepMIALab / AI-FFPE
  Deep Learning-based Frozen Section to FFPE Translation
  ☆59Updated 9 months ago
• manuel-munoz-aguirre / PyHIST
  A pipeline to segment tissue from the background in histological images
  ☆70Updated 2 years ago
• Path-AI / hif2gene
  Data and code to accompany our Nature publication
  ☆46Updated 3 years ago
• wenqi006 / SlideGraph
  ☆55Updated 3 years ago
• AdalbertoCq / Histomorphological-Phenotype-Learning
  Corresponding code of 'Quiros A.C.+, Coudray N.+, Yeaton A., Yang X., Chiriboga L., Karimkhan A., Narula N., Pass H., Moreira A.L., Le Qu…
  ☆68Updated 5 months ago
• EIDOSLAB / torchstain
  Stain normalization tools for histological analysis and computational pathology
  ☆147Updated 6 months ago
• masih4 / NuInsSeg
  NuInsSeg: A Fully Annotated Dataset for Nuclei Instance Segmentation in H&E-Stained Histological Images
  ☆33Updated last year
• MathOnco / valis
  Virtual Alignment of pathoLogy Image Series
  ☆166Updated 3 weeks ago