choosehappy / PatchSorterLinks
A tool for rapidly labeling objects using deep learning feature embedding
β34Updated 3 months ago
Alternatives and similar repositories for PatchSorter
Users that are interested in PatchSorter are comparing it to the libraries listed below
Sorting:
- Python 3 library for the augmentation & normalization of H&E imagesβ61Updated 3 years ago
- π₯ π Blazingly fast pipeline for patch-based classification in whole slide imagesβ84Updated last year
- Analysis of 3D pathology samples using weakly supervised AI - Cellβ110Updated 10 months ago
- An open-source digital pathology based rapid image annotation toolβ88Updated 3 weeks ago
- GrandQC tool for tissue detection and quality control in pathologyβ75Updated 9 months ago
- A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.β107Updated last month
- QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/β26Updated last week
- Solid Tumor Associative Modeling in Pathologyβ102Updated last week
- A Python library for deep learning on whole-slide imagesβ53Updated 4 years ago
- Blazing fast nuclei segmentation for brightfield Whole Slide Imagesβ35Updated 10 months ago
- Pipeline for computational pathologyβ38Updated last year
- π¬ Code-free deep segmentation for computational pathologyβ56Updated last year
- Weakly-supervised learning pipeline for histopathology images. Publications: Biomarker prediction in colorectal cancer (CRC)β85Updated last year
- A pipeline to segment tissue from the background in histological imagesβ71Updated 2 years ago
- Interactive deep learning whole-cell segmentation and thresholding using partial annotationsβ41Updated 3 months ago
- β37Updated 8 months ago
- Quality control of whole-slide images through multi-class semantic segmentation of artifactsβ38Updated last year
- Virtual Alignment of pathoLogy Image Seriesβ192Updated 5 months ago
- Tools to build deep learning pipelines.β112Updated last year
- NuInsSeg: A Fully Annotated Dataset for Nuclei Instance Segmentation in H&E-Stained Histological Imagesβ37Updated last year
- PAthological QUpath Obsession - QuPath and Python conversationsβ126Updated 3 months ago
- β20Updated 2 years ago
- A neural network software for using Molecular labelling to improve pathological annotation of H and E tissuesβ32Updated 10 months ago
- Corresponding code of 'Quiros A.C.+, Coudray N.+, Yeaton A., Yang X., Chiriboga L., Karimkhan A., Narula N., Pass H., Moreira A.L., Le Quβ¦β77Updated 10 months ago
- Whole Slide image (WSI) conversion for brightfield histology imagesβ36Updated this week
- A standardized Python API with necessary preprocessing, machine learning and explainability tools to facilitate graph-analytics in computβ¦β261Updated last year
- Stain normalization tools for histological analysis and computational pathologyβ164Updated 3 weeks ago
- Tools for whole slide image (WSI) processing. Especially for (pairwise) patch extraction, annotation parsing and data preparation for deeβ¦β56Updated last year
- List of pathology feature extractors and foundation modelsβ159Updated 6 months ago
- β21Updated 5 months ago