choosehappy / PatchSorterLinks
A tool for rapidly labeling objects using deep learning feature embedding
☆34Updated 4 months ago
Alternatives and similar repositories for PatchSorter
Users that are interested in PatchSorter are comparing it to the libraries listed below
Sorting:
- Python 3 library for the augmentation & normalization of H&E images☆62Updated 3 years ago
- 🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images☆84Updated last year
- Analysis of 3D pathology samples using weakly supervised AI - Cell☆110Updated 11 months ago
- An open-source digital pathology based rapid image annotation tool☆89Updated last week
- GrandQC tool for tissue detection and quality control in pathology☆76Updated 9 months ago
- Pipeline for computational pathology☆37Updated last year
- QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/☆27Updated 3 weeks ago
- A Python library for deep learning on whole-slide images☆53Updated 4 years ago
- Solid Tumor Associative Modeling in Pathology☆103Updated 3 weeks ago
- ☆20Updated 3 years ago
- A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.☆107Updated last month
- Blazing fast nuclei segmentation for brightfield Whole Slide Images☆37Updated 10 months ago
- 🔬 Code-free deep segmentation for computational pathology☆56Updated last year
- Virtual Alignment of pathoLogy Image Series☆198Updated 6 months ago
- Quality control of whole-slide images through multi-class semantic segmentation of artifacts☆38Updated last year
- ☆37Updated 9 months ago
- A pipeline to segment tissue from the background in histological images☆71Updated 2 years ago
- Whole Slide image (WSI) conversion for brightfield histology images☆36Updated 3 weeks ago
- ☆55Updated 4 months ago
- Interactive deep learning whole-cell segmentation and thresholding using partial annotations☆41Updated this week
- ☆15Updated 10 months ago
- Stain normalization tools for histological analysis and computational pathology☆166Updated last month
- Coincides with blogpost for using geojson and shapely☆33Updated 5 years ago
- Data and code to accompany our Nature publication☆48Updated 3 years ago
- Intelligent data partitioning using quality control metrics☆19Updated 6 months ago
- Tools to build deep learning pipelines.☆112Updated last year
- Corresponding code of 'Quiros A.C.+, Coudray N.+, Yeaton A., Yang X., Chiriboga L., Karimkhan A., Narula N., Pass H., Moreira A.L., Le Qu…☆79Updated 10 months ago
- A standardized Python API with necessary preprocessing, machine learning and explainability tools to facilitate graph-analytics in comput…☆263Updated 2 years ago
- NuInsSeg: A Fully Annotated Dataset for Nuclei Instance Segmentation in H&E-Stained Histological Images☆39Updated last year
- Weakly-supervised learning pipeline for histopathology images. Publications: Biomarker prediction in colorectal cancer (CRC)☆84Updated last year