Alternatives and similar repositories for PatchSorter

Users that are interested in PatchSorter are comparing it to the libraries listed below

• SBU-BMI / wsinfer
  🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images
  ☆71Updated 11 months ago
• MaryamHaghighat / PathProfiler
  Pipeline for computational pathology
  ☆36Updated last year
• cpath-ukk / grandqc
  GrandQC tool for tissue detection and quality control in pathology
  ☆49Updated 3 months ago
• sebastianffx / stainlib
  Python 3 library for the augmentation & normalization of H&E images
  ☆56Updated 2 years ago
• qupath / qupath-extension-wsinfer
  QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/
  ☆24Updated this week
• John-P / wsic
  Whole Slide image (WSI) conversion for brightfield histology images
  ☆37Updated this week
• impromptuRong / hd_wsi
  ☆34Updated 3 months ago
• choosehappy / HoverFast
  Blazing fast nuclei segmentation for brightfield Whole Slide Images
  ☆35Updated 4 months ago
• KatherLab / STAMP
  Solid Tumor Associative Modeling in Pathology
  ☆80Updated this week
• DIAGNijmegen / pathology-artifact-detection
  Quality control of whole-slide images through multi-class semantic segmentation of artifacts
  ☆33Updated last year
• markowetzlab / pathml
  A Python library for deep learning on whole-slide images
  ☆53Updated 3 years ago
• secrierlab / HistoMIL
  A Python package for handling histopathology whole-slide images using multiple instance learning (MIL) techniques.
  ☆30Updated last year
• KatherLab / preProcessing
  ☆45Updated 2 years ago
• mahmoodlab / CRANE
  Deep learning enabled assessment of cardiac allograft rejection from endomyocardial biopsies- Nature Medicine
  ☆31Updated 3 years ago
• peng-lab / HistoBistro
  Weakly-supervised learning pipeline for histopathology images. Publications: Biomarker prediction in colorectal cancer (CRC)
  ☆80Updated last year
• mahmoodlab / TriPath
  Analysis of 3D pathology samples using weakly supervised AI - Cell
  ☆101Updated 5 months ago
• smujiang / Re-stained_WSIs_Registration
  Re-stained whole slide image alignment
  ☆33Updated last year
• choosehappy / CohortFinder
  Intelligent data partitioning using quality control metrics
  ☆18Updated 2 weeks ago
• mahmoodlab / Patho-Bench
  Standardized benchmark for computational pathology foundation models.
  ☆83Updated last week
• WeisiX / ITAS3D
  Image-translation-assisted segmentation in 3D
  ☆26Updated 3 years ago
• huangzhii / IMPRESS
  ☆20Updated 2 years ago
• wenqi006 / SlideGraph
  ☆55Updated 3 years ago
• kaiko-ai / towards_large_pathology_fms
  This repository contains the official implementation of the research paper: "Towards Training Large-Scale Pathology Foundation Models: fr…
  ☆29Updated 5 months ago
• masih4 / NuInsSeg
  NuInsSeg: A Fully Annotated Dataset for Nuclei Instance Segmentation in H&E-Stained Histological Images
  ☆33Updated 11 months ago
• choosehappy / QuickAnnotator
  An open-source digital pathology based rapid image annotation tool
  ☆78Updated last week
• kmboehm / orpheus
  ☆14Updated 4 months ago
• nadeemlab / ImPartial
  Interactive deep learning whole-cell segmentation and thresholding using partial annotations
  ☆39Updated last week
• ShahiraAbousamra / til_classification
  ☆15Updated last year
• Path-AI / hif2gene
  Data and code to accompany our Nature publication
  ☆46Updated 3 years ago
• jamesdolezal / synthetic-histology
  Synthetic histology using GANs, for deep learning model explainability and trainee education.
  ☆15Updated last year