Alternatives and similar repositories for hd_wsi:

Users that are interested in hd_wsi are comparing it to the libraries listed below

• MathOnco / valis
  Virtual Alignment of pathoLogy Image Series
  ☆149Updated 3 months ago
• MaryamHaghighat / PathProfiler
  Pipeline for computational pathology
  ☆34Updated last year
• MWod / DeeperHistReg
  DeeperHistReg - Source Code
  ☆51Updated 10 months ago
• peng-lab / HistoBistro
  Weakly-supervised learning pipeline for histopathology images. Publications: Biomarker prediction in colorectal cancer (CRC)
  ☆68Updated last year
• KatherLab / marugoto
  Tools to build deep learning pipelines.
  ☆94Updated 4 months ago
• smujiang / Re-stained_WSIs_Registration
  Re-stained whole slide image alignment
  ☆32Updated last year
• WeisiX / ITAS3D
  Image-translation-assisted segmentation in 3D
  ☆26Updated 3 years ago
• mahmoodlab / TriPath
  Analysis of 3D pathology samples using weakly supervised AI - Cell
  ☆97Updated 2 months ago
• clemsgrs / hs2p
  Histopathology Slides Preprocessing Pipeline
  ☆36Updated last week
• John-P / wsic
  Whole Slide image (WSI) conversion for brightfield histology images
  ☆35Updated 3 weeks ago
• KatherLab / HIA
  Histopathology Image Analysis
  ☆93Updated last year
• PathologyDataScience / HiPS
  Histomic Prognostic Signature (HiPS): A population-level computational histologic signature for invasive breast cancer prognosis
  ☆24Updated 11 months ago
• qinghezeng / Histo2GeneSignatures
  Artificial Intelligence predicts immune and inflammatory gene signatures directly from hepatocellular carcinoma histology images
  ☆20Updated 8 months ago
• simongraham / hovernet_inference
  HoVer-Net inference code for simultaneous nuclear segmentation and classification
  ☆66Updated 2 years ago
• choosehappy / HoverFast
  Blazing fast nuclei segmentation for brightfield Whole Slide Images
  ☆35Updated last month
• sebastianffx / stainlib
  Python 3 library for the augmentation & normalization of H&E images
  ☆52Updated 2 years ago
• secrierlab / HistoMIL
  A Python package for handling histopathology whole-slide images using multiple instance learning (MIL) techniques.
  ☆29Updated 10 months ago
• DIAGNijmegen / pathology-whole-slide-data
  A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.
  ☆97Updated 4 months ago
• SBU-BMI / wsinfer
  🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images
  ☆67Updated 8 months ago
• kevindehaan / stain-transformation
  ☆40Updated 3 years ago
• andreped / NoCodeSeg
  🔬 Code-free deep segmentation for computational pathology
  ☆53Updated 9 months ago
• okunator / cellseg_models.pytorch
  Encoder-Decoder Cell and Nuclei segmentation models
  ☆89Updated last month
• wenqi006 / SlideGraph
  ☆52Updated 3 years ago
• PathologyDataScience / NuCLS
  NuCLS: A scalable crowdsourcing, deep learning approach and dataset for nucleus classification, localization and segmentation
  ☆53Updated 2 years ago
• taliq / TEA-graph
  First commit
  ☆60Updated 2 years ago
• ksugar / qupath-extension-sam
  QuPath extension for Segment Anything Model (SAM)
  ☆103Updated 2 weeks ago
• KatherLab / STAMP
  Solid Tumor Associative Modeling in Pathology
  ☆66Updated this week
• georg-wolflein / pathology-foundation-models
  List of pathology feature extractors and foundation models
  ☆109Updated last month
• cpath-ukk / grandqc
  GrandQC tool for tissue detection and quality control in pathology
  ☆31Updated 2 weeks ago
• trislaz / wsi_mil
  ☆19Updated last year