Pathomation / pma_python
Python wrapper library for PMA.start, a universal viewier for whole slide imaging and microscopy
☆30Updated last month
Alternatives and similar repositories for pma_python:
Users that are interested in pma_python are comparing it to the libraries listed below
- Re-stained whole slide image alignment☆32Updated last year
- Tool to visualize gigantic pathology images and use AI to segment cancer cells and present as an overlay☆67Updated this week
- Interactive Segmentation of Nucleus☆61Updated 2 years ago
- A Girder plugin for pathology image annotations and analysis.☆60Updated this week
- The official deployment of the Digital Slide Archive and HistomicsTK.☆112Updated this week
- An open-source digital pathology based rapid image annotation tool☆75Updated this week
- Strip potentially identifying label and macro images from Aperio SVS whole slide image files☆29Updated 8 months ago
- Delete the label from a whole-slide image☆62Updated 3 years ago
- Codes for Fast GPU-Enabled Color Normalization of Whole Slide Images in Digital Pathology☆75Updated 4 years ago
- Whole Slide Digital Pathology Image Tissue Localization☆44Updated last year
- H&E tailored Randaugment: automatic data augmentation policy selection for H&E-stained histopathology.☆52Updated last year
- Pipeline for computational pathology☆34Updated last year
- 🔬 Code-free deep segmentation for computational pathology☆53Updated 7 months ago
- Use streaming to train whole-slides images with single image-level labels, by reducing GPU memory requirements with 99%.☆75Updated 2 years ago
- HoVer-Net inference code for simultaneous nuclear segmentation and classification☆66Updated 2 years ago
- ☆56Updated 3 months ago
- Digital Pathology Whole Slide Image Analysis Toolbox☆48Updated last year
- Quality control of whole-slide images through multi-class semantic segmentation of artifacts☆30Updated 11 months ago
- A pipeline to segment tissue from the background in histological images☆67Updated last year
- Coincides with blogpost for using geojson and shapely☆30Updated 4 years ago
- Python 3 library for the augmentation & normalization of H&E images☆51Updated 2 years ago
- Histopathology Image Analysis☆93Updated last year
- ☆43Updated last year
- ⚡ Open-source software for deep learning-based digital pathology☆125Updated 7 months ago
- Simple library for preprocessing histopathological whole-slide images (WSI) into tiles (a.k.a. patches) towards deep learning☆51Updated last year
- Corresponding code of 'Quiros A.C.+, Coudray N.+, Yeaton A., Yang X., Chiriboga L., Karimkhan A., Narula N., Pass H., Moreira A.L., Le Qu…☆50Updated 2 months ago
- Image filters for digital pathology: detect pen marks, background, and artifacts. Use them for preprocessing towards deep learning☆27Updated 4 years ago
- Full package for applying deep learning to virtual slides.☆67Updated 6 years ago
- Implementation of Cluster-to-Conquer: A Framework for End-to-End Multi-Instance Learning for Whole Slide Image Classification approach.☆60Updated 3 years ago
- This repository provides scripts to reproduce the results in the paper "An annotation-free whole-slide training approach to pathological …☆62Updated 3 years ago