Pathomation / pma_pythonLinks
Python wrapper library for PMA.start, a universal viewier for whole slide imaging and microscopy
☆33Updated 10 months ago
Alternatives and similar repositories for pma_python
Users that are interested in pma_python are comparing it to the libraries listed below
Sorting:
- Tool to visualize gigantic pathology images and use AI to segment cancer cells and present as an overlay☆73Updated 9 months ago
- ☆65Updated last year
- Whole Slide Digital Pathology Image Tissue Localization☆45Updated 2 years ago
- H&E tailored Randaugment: automatic data augmentation policy selection for H&E-stained histopathology.☆57Updated 2 years ago
- Codes for Fast GPU-Enabled Color Normalization of Whole Slide Images in Digital Pathology☆75Updated 5 years ago
- HoVer-Net inference code for simultaneous nuclear segmentation and classification☆69Updated 2 years ago
- ⚡ Open-source software for deep learning-based digital pathology☆138Updated last year
- GPU-accelerated stain normalization command line tool☆23Updated 2 years ago
- 🔬 Code-free deep segmentation for computational pathology☆56Updated last year
- Quality control of whole-slide images through multi-class semantic segmentation of artifacts☆38Updated last year
- Re-stained whole slide image alignment☆35Updated 2 years ago
- A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.☆107Updated last week
- Delete the label from a whole-slide image☆65Updated 4 years ago
- An open-source digital pathology based rapid image annotation tool☆86Updated 2 weeks ago
- Whole Slide Image segmentation with weakly supervised multiple instance learning on TCGA | MICCAI2020 https://arxiv.org/abs/2004.05024☆141Updated 4 years ago
- Coincides with blogpost for using geojson and shapely☆33Updated 4 years ago
- Whole Slide Image (WSI) Processing Library for Histopathological / Cytopathological Machine Learning Tasks☆24Updated 2 years ago
- Histopathology Image Analysis☆92Updated 2 years ago
- Interactive Segmentation of Nucleus☆66Updated 2 years ago
- A Girder plugin for pathology image annotations and analysis.☆75Updated 2 weeks ago
- Image filters for digital pathology: detect pen marks, background, and artifacts. Use them for preprocessing towards deep learning☆28Updated 5 years ago
- The official deployment of the Digital Slide Archive and HistomicsTK.☆130Updated last week
- Python package for dealing with whole slide images (.svs) for machine learning, particularly for fast prototyping. Includes patch samplin…☆164Updated last year
- Full package for applying deep learning to virtual slides.☆71Updated 7 years ago
- A simple web application for for viewing and navigating pathology whole-slide-images in your browser.☆15Updated 2 years ago
- This repository provides scripts to reproduce the results in the paper "An annotation-free whole-slide training approach to pathological …☆64Updated 3 years ago
- Use streaming to train whole-slides images with single image-level labels, by reducing GPU memory requirements with 99%.☆79Updated 2 years ago
- A pipeline to segment tissue from the background in histological images☆70Updated 2 years ago
- DeepLearning - Camelyon16 dataset☆127Updated 7 years ago
- AI-based pathology predicts origins for cancers of unknown primary - Nature☆175Updated 3 years ago