Alternatives and similar repositories for wsic:

Users that are interested in wsic are comparing it to the libraries listed below

• MaryamHaghighat / PathProfiler
  Pipeline for computational pathology
  ☆34Updated last year
• TissueImageAnalytics / iguana
  Interpretable Gland-Graph Networks
  ☆20Updated 10 months ago
• KatherLab / STAMP
  Solid Tumor Associative Modeling in Pathology
  ☆54Updated this week
• DIAGNijmegen / pathology-artifact-detection
  Quality control of whole-slide images through multi-class semantic segmentation of artifacts
  ☆30Updated last year
• georg-wolflein / pathology-foundation-models
  List of pathology feature extractors and foundation models
  ☆88Updated this week
• SBU-BMI / wsinfer
  🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images
  ☆65Updated 6 months ago
• KatherLab / marugoto
  Tools to build deep learning pipelines.
  ☆90Updated 2 months ago
• impromptuRong / hd_wsi
  ☆27Updated 2 months ago
• qupath / qupath-extension-wsinfer
  QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/
  ☆23Updated last month
• KatherLab / HIA
  Histopathology Image Analysis
  ☆93Updated last year
• secrierlab / HistoMIL
  A Python package for handling histopathology whole-slide images using multiple instance learning (MIL) techniques.
  ☆28Updated 8 months ago
• DIAGNijmegen / pathology-whole-slide-data
  A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.
  ☆96Updated 2 months ago
• sebastianffx / stainlib
  Python 3 library for the augmentation & normalization of H&E images
  ☆51Updated 2 years ago
• choosehappy / HoverFast
  Blazing fast nuclei segmentation for brightfield Whole Slide Images
  ☆33Updated last month
• peng-lab / HistoBistro
  Weakly-supervised learning pipeline for histopathology images. Publications: Biomarker prediction in colorectal cancer (CRC)
  ☆66Updated 11 months ago
• Bayer-Group / tiffslide
  TiffSlide - cloud native openslide-python replacement based on tifffile
  ☆91Updated 2 weeks ago
• MathOnco / valis
  Virtual Alignment of pathoLogy Image Series
  ☆138Updated last month
• jopo666 / HistoEncoder
  ☆41Updated 2 months ago
• PathologyDataScience / HiPS
  Histomic Prognostic Signature (HiPS): A population-level computational histologic signature for invasive breast cancer prognosis
  ☆23Updated 9 months ago
• DIAGNijmegen / pathology-he-auto-augment
  H&E tailored Randaugment: automatic data augmentation policy selection for H&E-stained histopathology.
  ☆52Updated last year
• simongraham / hovernet_inference
  HoVer-Net inference code for simultaneous nuclear segmentation and classification
  ☆66Updated 2 years ago
• AICAN-Research / FAST-Pathology
  ⚡ Open-source software for deep learning-based digital pathology
  ☆126Updated 7 months ago
• pearcetm / svs-deidentifier
  Strip potentially identifying label and macro images from Aperio SVS whole slide image files
  ☆29Updated 9 months ago
• choosehappy / PatchSorter
  A tool for rapidly labeling objects using deep learning feature embedding
  ☆29Updated 5 months ago
• choosehappy / QuickAnnotator
  An open-source digital pathology based rapid image annotation tool
  ☆75Updated last week
• jnkather / DeepHistology
  A pan-cancer platform for mutation prediction from routine histology
  ☆68Updated 3 years ago
• vqdang / H2T
  ☆36Updated last year
• mahmoodlab / MMP
  Multimodal prototyping for cancer survival prediction - ICML 2024
  ☆67Updated 4 months ago
• clemsgrs / hs2p
  Histopathology Slides Preprocessing Pipeline
  ☆36Updated last month
• markowetzlab / pathml
  A Python library for deep learning on whole-slide images
  ☆50Updated 3 years ago