Whole Slide image (WSI) conversion for brightfield histology images
☆42Oct 5, 2026Updated last week
Alternatives and similar repositories for wsic
Users that are interested in wsic are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Interpretable Gland-Graph Networks☆22Mar 7, 2024Updated 2 years ago
- iSyntax to raw format converter☆24Nov 26, 2025Updated 10 months ago
- Gpu accelerated vahadane stain normalization for Digital Pathology workflows.☆28Feb 23, 2024Updated 2 years ago
- Computational Pathology Toolbox developed by TIA Centre, University of Warwick.☆558Oct 9, 2026Updated last week
- A tool for rapidly labeling objects using deep learning feature embedding☆36Sep 23, 2026Updated 3 weeks ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Interactive Segmentation of Nucleus☆68Nov 22, 2022Updated 3 years ago
- Pipeline for computational pathology☆45Jan 4, 2024Updated 2 years ago
- Python package for reading DICOM WSI file sets.☆53Updated this week
- ☆37Mar 21, 2025Updated last year
- ☆17Aug 13, 2025Updated last year
- GrandQC tool for tissue detection and quality control in pathology☆125Dec 27, 2025Updated 9 months ago
- Use this package to compute intrinsic dimensionality of your task given a fixed neural network in PYTORCH!☆37Nov 22, 2022Updated 3 years ago
- ☆11Oct 21, 2023Updated 2 years ago
- Histopathology Image Analysis☆95Jul 6, 2023Updated 3 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- List of academic institutes/companies working on computer-based digital pathology image analysis☆46Jul 17, 2026Updated 3 months ago
- ☆31Jul 3, 2026Updated 3 months ago
- Powerful, open-source AI tools for digital pathology.☆376Oct 5, 2026Updated last week
- C++ whole slide image reader with native python bindings☆55Sep 22, 2026Updated 3 weeks ago
- Various tools for creating and manipulating Zarr V3 data with the zarrs Rust crate☆36Feb 1, 2026Updated 8 months ago
- Prototype implementation of zarr v3 in rust☆18Nov 20, 2023Updated 2 years ago
- Hibou: Foundational Models for Pathology☆82Oct 23, 2024Updated last year
- source code of Inter-MIL: self-interactive multi-instance learning☆17Aug 1, 2023Updated 3 years ago
- Python library for reading tiles from wsi tiff-files.☆20Oct 10, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- TiffSlide - cloud native openslide-python replacement based on tifffile☆107Jul 3, 2026Updated 3 months ago
- Standardized benchmark for computational pathology foundation models.☆157Nov 7, 2025Updated 11 months ago
- A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.☆119Nov 8, 2025Updated 11 months ago
- Use streaming to train whole-slides images with single image-level labels, by reducing GPU memory requirements with 99%.☆79Jan 9, 2023Updated 3 years ago
- QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/☆29Dec 3, 2025Updated 10 months ago
- Google Colab notebook for Cellpose☆11Aug 21, 2025Updated last year
- ☆36Jan 29, 2025Updated last year
- ☆15Updated this week
- Syntax - the arrangement of whole-slide-images and their image tiles to create well-formed computational pathology pipelines.☆55Nov 22, 2022Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Python 3 library for the augmentation & normalization of H&E images☆66Sep 12, 2022Updated 4 years ago
- A Python library of pre- and post-processing tools for applying deep learning to whole-slide images☆23Jan 16, 2023Updated 3 years ago
- ☆225Jul 23, 2025Updated last year
- ☆21Jun 3, 2024Updated 2 years ago
- Python script to comvert Philips iSyntax files to OME-TIFF☆14Dec 30, 2022Updated 3 years ago
- Pytorch implementation of NuClick for interactive cell segmentation☆40Apr 17, 2024Updated 2 years ago
- A Python library for working with iSyntax file format images☆22Sep 13, 2026Updated last month