John-P / wsic
Whole Slide image (WSI) conversion for brightfield histology images
☆35Updated 2 weeks ago
Alternatives and similar repositories for wsic:
Users that are interested in wsic are comparing it to the libraries listed below
- Pipeline for computational pathology☆34Updated last year
- Quality control of whole-slide images through multi-class semantic segmentation of artifacts☆30Updated last year
- 🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images☆67Updated 7 months ago
- Interpretable Gland-Graph Networks☆21Updated 11 months ago
- Solid Tumor Associative Modeling in Pathology☆61Updated 2 weeks ago
- List of pathology feature extractors and foundation models☆99Updated last month
- Python 3 library for the augmentation & normalization of H&E images☆52Updated 2 years ago
- A Python package for handling histopathology whole-slide images using multiple instance learning (MIL) techniques.☆28Updated 9 months ago
- Weakly-supervised learning pipeline for histopathology images. Publications: Biomarker prediction in colorectal cancer (CRC)☆67Updated last year
- A tool for rapidly labeling objects using deep learning feature embedding☆31Updated 6 months ago
- A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.☆97Updated 3 months ago
- This repository contains the official implementation of the research paper: "Towards Training Large-Scale Pathology Foundation Models: fr…☆27Updated last month
- Histopathology Image Analysis☆92Updated last year
- Blazing fast nuclei segmentation for brightfield Whole Slide Images☆35Updated 3 weeks ago
- Histomic Prognostic Signature (HiPS): A population-level computational histologic signature for invasive breast cancer prognosis☆24Updated 10 months ago
- Re-stained whole slide image alignment☆32Updated last year
- ☆29Updated 3 months ago
- An open-source digital pathology based rapid image annotation tool☆76Updated this week
- QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/☆23Updated last week
- Tools to build deep learning pipelines.☆93Updated 3 months ago
- GrandQC tool for tissue detection and quality control in pathology☆29Updated last month
- Strip potentially identifying label and macro images from Aperio SVS whole slide image files☆30Updated 10 months ago
- Delete the label from a whole-slide image☆63Updated 3 years ago
- Virtual Alignment of pathoLogy Image Series☆145Updated 2 months ago
- HoVer-Net inference code for simultaneous nuclear segmentation and classification☆66Updated 2 years ago
- ☆41Updated 3 months ago
- Encoder-Decoder Cell and Nuclei segmentation models☆89Updated last week
- H&E tailored Randaugment: automatic data augmentation policy selection for H&E-stained histopathology.☆52Updated last year
- ☆36Updated 2 years ago
- TiffSlide - cloud native openslide-python replacement based on tifffile☆95Updated last month