Alternatives and similar repositories for Lab_Info

Users that are interested in Lab_Info are comparing it to the libraries listed below

• schneebergerlab / AMPRIL-genomes
  scripts for the project of seven thaliana genomes assembly
  ☆42Updated 4 years ago
• obenno / ShinySyn
  A shiny application to visualize MCscan result
  ☆38Updated 3 years ago
• clemgoub / dnaPipeTE
  dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…
  ☆59Updated 2 years ago
• JiangYuLab / CNVcaller
  ☆42Updated 2 years ago
• harvardinformatics / degenotate
  ☆54Updated 7 months ago
• annaprotasio / TE_ManAnnot
  Accompanying repository for our publications on manual curation methods for Transposable Elements.
  ☆21Updated last year
• wjian8 / psvcp_v1.01
  Pan-genome Construction and Population Structure Variation Calling pipeline
  ☆45Updated last year
• tsackton / linked-selection
  ☆24Updated 8 years ago
• ShiuLab / PseudogenePipeline
  ☆41Updated 2 years ago
• alachins / raisd
  RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors
  ☆37Updated 2 years ago
• ellenbell / FasTE
  A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…
  ☆27Updated 3 years ago
• tonig-evo / workshop-popgenome
  Tutorial about R package PopGenome
  ☆43Updated 6 years ago
• shenglin-liu / vcf2sfs
  R functions for generating site frequency spectra (SFS) from a VCF file.
  ☆28Updated 5 years ago
• sjteresi / TE_Density
  Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…
  ☆37Updated last year
• hillerlab / make_lastz_chains
  Portable solution to generate genome alignment chains using lastz
  ☆60Updated last month
• ngarud / SelectionHapStats
  SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…
  ☆28Updated 7 years ago
• JanaSperschneider / FindTelomeres
  A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files
  ☆36Updated 3 years ago
• phasegenomics / juicebox_scripts
  A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats
  ☆69Updated 4 years ago
• simon19891216 / CentIER
  ☆44Updated 6 months ago
• xiekunwhy / bsa
  Bulked-Segregant Analysis using vcf file with or without parents
  ☆31Updated last year
• hewm2008 / VCF2Dis
  VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files
  ☆53Updated 5 months ago
• alachins / sweed
  Likelihood-based Selective Sweep Detection
  ☆40Updated 2 years ago
• carolindahms / TreeMix
  Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…
  ☆42Updated last year
• vlothec / TRASH
  RepeatIdentifier
  ☆71Updated 10 months ago
• mapleforest / HaploMerger2
  ☆45Updated 9 years ago
• Dee-chen / Tree2gd
  ☆45Updated 3 years ago
• 4ureliek / Parsing-RepeatMasker-Outputs
  Few scripts facilitating the extraction of info from Repeat Masker .out files
  ☆85Updated 4 years ago
• GoreLab / Sorghum-HapMap
  Hapmap-v1
  ☆12Updated 5 years ago
• xjtu-omics / HiCAT
  HiCAT new project
  ☆31Updated 8 months ago
• KatharinaHoff / GenomeAnnotation_Workshop
  Materials for genome annotation sessions at the WORKSHOP ON GENOMICS, CESKY KRUMLOV
  ☆21Updated last week