Psy-Fer / fast5_fetcher
A tool for fetching nanopore fast5 files after filtering via demultiplexing, alignment, or other, to improve downstream processing efficiency
☆14Updated 6 years ago
Alternatives and similar repositories for fast5_fetcher:
Users that are interested in fast5_fetcher are comparing it to the libraries listed below
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆53Updated last year
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated last year
- reference-based long read assemblies of bacterial genomes☆48Updated 3 years ago
- catalog for long-read sequencing tools☆32Updated 2 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 4 years ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆30Updated 4 years ago
- de.NBI Nanopore Training Course☆20Updated 2 years ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆72Updated 4 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆74Updated 8 years ago
- A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate☆30Updated 3 years ago
- finshingTool☆55Updated 8 years ago
- ☆32Updated 4 years ago
- Generates an NCBI .tbl file of annotations on a genome.☆66Updated 7 years ago
- tools for assessing the accuracy of genome assemblies☆34Updated last year
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆40Updated 5 months ago
- Synteny Imager☆61Updated 8 months ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Rank-based Gene Ontology analysis of gene expression data☆41Updated 2 years ago
- Remove lambda phage reads from a fastq file☆29Updated 2 years ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Error correction of ONT transcript reads☆58Updated last year
- Fast k-mer based tool for multi locus sequence typing (MLST)☆44Updated 4 years ago
- Long read metagenomics practical at EBAME18☆18Updated 6 years ago
- A snakemake pipeline to assembly, polishing, correction and quality check from Oxford nanopore reads.☆36Updated last month
- whole genome MLST analysis☆42Updated last month
- ☆43Updated 8 years ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆56Updated 2 years ago
- Extract metagenome-assembled genomes (MAGs) from metagenomic data using Hi-C.☆23Updated last month
- ☆36Updated 3 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago