Psy-Fer / fast5_fetcher
A tool for fetching nanopore fast5 files after filtering via demultiplexing, alignment, or other, to improve downstream processing efficiency
☆14Updated 5 years ago
Related projects ⓘ
Alternatives and complementary repositories for fast5_fetcher
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆53Updated last year
- de.NBI Nanopore Training Course☆19Updated 2 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 3 years ago
- reference-based long read assemblies of bacterial genomes☆47Updated 3 years ago
- catalog for long-read sequencing tools☆32Updated last year
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆74Updated 8 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 4 years ago
- finshingTool☆54Updated 8 years ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆30Updated 3 years ago
- Extract metagenome-assembled genomes (MAGs) from metagenomic data using Hi-C.☆23Updated 9 months ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆56Updated last year
- ☆26Updated this week
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆37Updated this week
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆68Updated 3 years ago
- Error correction of ONT transcript reads☆58Updated last year
- Filter SAM file for soft and hard clipped alignments☆46Updated 5 months ago
- MarginPolish: Graph based assembly polishing☆45Updated 4 years ago
- Remove lambda phage reads from a fastq file☆28Updated last year
- Splitting of sequence reads by internal adapter sequence search☆52Updated last year
- Generates an NCBI .tbl file of annotations on a genome.☆65Updated 6 years ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆51Updated last year
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆29Updated 8 months ago
- Simple pileup-based variant caller☆83Updated 7 months ago
- ☆26Updated 5 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆59Updated 4 years ago
- Workflows for metagenomic sequence data processing and analysis.☆17Updated 5 years ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆42Updated 4 years ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Updated 3 years ago