Psy-Fer / fast5_fetcherLinks
A tool for fetching nanopore fast5 files after filtering via demultiplexing, alignment, or other, to improve downstream processing efficiency
☆14Updated 6 years ago
Alternatives and similar repositories for fast5_fetcher
Users that are interested in fast5_fetcher are comparing it to the libraries listed below
Sorting:
- A short analysis of Oxford Nanopore consensus accuracy for bacterial genome assemblies☆60Updated 6 years ago
- ☆80Updated 5 years ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆76Updated 4 years ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆31Updated 5 years ago
- Synteny Imager☆65Updated this week
- A tool for Racon polishing of miniasm assemblies☆78Updated 3 months ago
- Splitting of sequence reads by internal adapter sequence search☆51Updated 2 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 4 years ago
- Quickly calculate and visualize sequence coverage in alignment files☆101Updated 6 years ago
- ☆84Updated 2 years ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆106Updated 3 months ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆54Updated 2 years ago
- Error correction of ONT transcript reads☆58Updated 2 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆77Updated 9 years ago
- de.NBI Nanopore Training Course☆20Updated 6 months ago
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆54Updated last year
- qcat is a Python command-line tool for demultiplexing Oxford Nanopore reads from FASTQ files.☆80Updated 5 years ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 4 years ago
- Rank-based Gene Ontology analysis of gene expression data☆43Updated 3 years ago
- Dual barcode and primer demultiplexing for MinION sequenced reads☆41Updated 2 years ago
- High-quality Nanopore-only genome polisher☆69Updated last year
- Assembly statistic visualisation☆92Updated last year
- Visualize whole genome alignments as linear maps☆74Updated 4 months ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆59Updated 2 years ago
- nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nano…☆71Updated 3 years ago
- tools for assessing the accuracy of genome assemblies☆35Updated last year
- A fast tool for hybrid genome assembly of long and short reads☆78Updated 5 years ago
- Pipeline to convert a haploid assembly into diploid☆108Updated 10 months ago
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- Simple pileup-based variant caller☆95Updated 7 months ago