Psy-Fer / fast5_fetcherLinks
A tool for fetching nanopore fast5 files after filtering via demultiplexing, alignment, or other, to improve downstream processing efficiency
☆14Updated 6 years ago
Alternatives and similar repositories for fast5_fetcher
Users that are interested in fast5_fetcher are comparing it to the libraries listed below
Sorting:
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆74Updated 4 years ago
- ☆79Updated 4 years ago
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆52Updated 10 months ago
- A short analysis of Oxford Nanopore consensus accuracy for bacterial genome assemblies☆60Updated 6 years ago
- Splitting of sequence reads by internal adapter sequence search☆51Updated 2 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆54Updated 2 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 4 years ago
- A tool for Racon polishing of miniasm assemblies☆77Updated last month
- Hybrid error correction of long reads using colored de Bruijn graphs☆104Updated last month
- de.NBI Nanopore Training Course☆20Updated 3 months ago
- High-quality Nanopore-only genome polisher☆69Updated last year
- Synteny Imager☆64Updated 2 months ago
- ☆83Updated 2 years ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆31Updated 4 years ago
- Simple pileup-based variant caller☆92Updated 5 months ago
- Quickly calculate and visualize sequence coverage in alignment files☆100Updated 6 years ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 4 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Updated 4 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆76Updated 9 years ago
- Pipeline to convert a haploid assembly into diploid☆103Updated 8 months ago
- A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.☆86Updated 10 months ago
- tools for assessing the accuracy of genome assemblies☆34Updated last year
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated 10 months ago
- Wally: Visualization of aligned sequencing reads and contigs☆118Updated 5 months ago
- reference-based long read assemblies of bacterial genomes☆51Updated 4 years ago
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆55Updated 3 years ago
- Dual barcode and primer demultiplexing for MinION sequenced reads☆41Updated 2 years ago
- qcat is a Python command-line tool for demultiplexing Oxford Nanopore reads from FASTQ files.☆81Updated 4 years ago
- A local-haplotagging-based small and structural variant caller☆80Updated last month
- A fast tool for hybrid genome assembly of long and short reads☆78Updated 5 years ago