Alternatives and similar repositories for LIMMA-pipeline-proteomics:

Users that are interested in LIMMA-pipeline-proteomics are comparing it to the libraries listed below

• bartongroup / Proteus
  R package for analysing proteomics data
  ☆49Updated last year
• jeffsocal / tidyproteomics
  An S3 data object and framework for common quantitative proteomic analyses
  ☆40Updated 3 weeks ago
• bzhanglab / OmicsEV
  A tool for large scale omics datasets evaluation
  ☆24Updated last year
• broadinstitute / PANOPLY
  Repository for the Broad Institute Proteogenomic Data Analysis Center (PGDAC) established by the NIH Clinical Proteomics Tumor Analysis C…
  ☆34Updated last week
• saezlab / cosmosR
  COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…
  ☆59Updated 6 months ago
• lagelab / Genoppi
  Genoppi: an open-source software for robust and standardized integration of proteomic and genetic data
  ☆27Updated 9 months ago
• uc-bd2k / GREIN
  GREIN : GEO RNA-seq Experiments Interactive Navigator
  ☆48Updated 5 years ago
• saezlab / transcriptutorial
  This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL
  ☆55Updated last year
• WangLab-MSSM / DreamAI
  Imputation of missing values of a matrix or data.frame using iterative prediction model
  ☆32Updated last month
• yafeng / DEqMS
  DEqMS is a tool for quantitative proteomic analysis
  ☆23Updated 2 months ago
• reactome / ReactomeGSA
  R client for the REACTOME Analysis Service for comparative multi-omics gene set analysis
  ☆23Updated 2 months ago
• kenichi-shimada / depmap-analysis
  This repostory contains codes for Shimada et al., "A tool for browsing the Cancer Dependency Map reveals functional connections between g…
  ☆13Updated 3 years ago
• symbioticMe / proBatch
  Tools for Batch Effects Diagnostics and Correction
  ☆15Updated last year
• DavisLaboratory / msImpute
  Methods for label-free mass spectrometry proteomics
  ☆14Updated last year
• ConesaLab / MultiPower
  Statistical power studies for multi-omics experiments.
  ☆30Updated last month
• ucdavis-bioinformatics-training / 2017_2018-single-cell-RNA-sequencing-Workshop-UCD_UCB_UCSF
  2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF
  ☆35Updated 6 years ago
• DavisLaboratory / singscore
  An R/Bioconductor package that implements a single-sample molecular phenotyping approach
  ☆41Updated 3 months ago
• lehtiolab / proteogenomics-analysis-workflow
  IPAW: a Nextflow workflow for proteogenomics
  ☆25Updated 6 months ago
• KChen-lab / METAFlux
  ☆57Updated 7 months ago
• cansysbio / ConsensusTME
  ConsensusTME Gene Sets and R Script
  ☆39Updated 8 months ago
• songw01 / MEGENA
  Multiscale embedded gene co-expression network analysis
  ☆49Updated last year
• MonashBioinformaticsPlatform / LFQ-Analyst
  The repo for LFQ-Analyst
  ☆29Updated 6 months ago
• SamBuckberry / RUN-WGCNA
  Wrapper R scripts for performing a weighted-gene co-expression network analysis (WGCNA)
  ☆28Updated 9 years ago
• mdozmorov / Immuno_notes
  Immunology-related bioinformatics data and tools
  ☆71Updated 9 months ago
• Biobix / proteoformer
  Integration ribosome profiling - mass spectrometry
  ☆14Updated this week
• cit-bioinfo / BLCAsubtyping
  Transcriptomic tools to classify bladder tumours according to six published molecular classifications : Baylor, UNC, MDA, Lund, CIT-Curie…
  ☆25Updated 2 years ago
• shenorrLabTRDF / bseqsc
  Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline
  ☆44Updated last year
• mildpiggy / DEP2
  An r package for proteomics data Analysis, developed from DEP.
  ☆25Updated 3 months ago
• bigbio / ibaqpy
  Absolute quantification package based on quantms.io
  ☆13Updated last week
• tidymass / tidymass
  tidymass
  ☆54Updated last year