wasimaftab / LIMMA-pipeline-proteomicsLinks
LIMMA (an empirical Bayes method) pipeline for two group comparison in a proteomic experiment
☆26Updated last year
Alternatives and similar repositories for LIMMA-pipeline-proteomics
Users that are interested in LIMMA-pipeline-proteomics are comparing it to the libraries listed below
Sorting:
- R package for analysing proteomics data☆49Updated 2 years ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆55Updated 2 years ago
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆61Updated last week
- ☆64Updated last year
- Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.☆84Updated 2 years ago
- collection of notebooks with different cytoscape workflows☆50Updated 2 years ago
- Please consider using/contributing to https://github.com/nf-core/scdownstream☆25Updated last year
- published papers with a lot of data☆73Updated 3 months ago
- Wrapper R scripts for performing a weighted-gene co-expression network analysis (WGCNA)☆28Updated 9 years ago
- Immunology-related bioinformatics data and tools☆74Updated last year
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆36Updated 7 years ago
- Pipelines for the analysis of 10x single-cell RNA-sequencing data☆59Updated 2 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆54Updated 4 years ago
- Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…☆51Updated 7 years ago
- ☆58Updated 4 years ago
- An S3 data object and framework for common quantitative proteomic analyses☆42Updated last month
- ☆68Updated 7 years ago
- Lightweight Iterative Gene set Enrichment in R☆57Updated 9 months ago
- Soon to be deprecated in favor of broadinstitute/warp github repo. Previously: Secondary analysis pipelines☆48Updated 4 months ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆45Updated 2 years ago
- ATAC-seq lab for BIOINF545☆25Updated 5 months ago
- ☆59Updated 10 months ago
- Integrative pathway enrichment analysis of multivariate omics data☆113Updated this week
- An R Package for Geneset Enrichment Workflows☆76Updated last month
- Signac☆25Updated 2 years ago
- Tutorials and code for ISMB 2019 short course on Recent Advances in Statistical Methods and Computational Algorithms for Single-Cell Omic…☆41Updated 5 years ago
- Workshop • Analysis of RNA-seq data☆36Updated last year
- Material for lecture at the EMBL Single Cell Course 2016☆47Updated 9 years ago
- Simplify functional enrichment results☆116Updated 10 months ago
- Repo for Physalia course Analysis of Single Cell RNA-Seq data☆32Updated 5 years ago