danro9685 / CIMLRLinks
Implementations in both Matlab and R of the CIMLR method. The manuscript of the method is available at: https://www.nature.com/articles/s41467-018-06921-8
☆18Updated 2 years ago
Alternatives and similar repositories for CIMLR
Users that are interested in CIMLR are comparing it to the libraries listed below
Sorting:
- BERMUDA (Batch Effect ReMoval Using Deep Autoencoders) is a novel transfer-learning-based method for batch correction in scRNA-seq data.☆31Updated 5 years ago
- SoptSC for single cell data analysis: unsupervised inference of clustering, cell lineage, pseudotime and cell-cell communication network …☆22Updated 4 years ago
- Deep Embedding for Single-cell Clustering☆87Updated last year
- Building classifiers using cancer transcriptomes across 33 different cancer-types☆119Updated 6 years ago
- ☆17Updated 5 years ago
- A benchmark of batch-effect correction methods for single-cell RNA sequencing data☆79Updated 3 years ago
- ☆46Updated 6 years ago
- Iterative transfer learning with neural network improves clustering and cell type classification in single-cell RNA-seq analysis☆54Updated 2 months ago
- Python framework for single-cell RNA-seq clustering with special focus on transfer learning.☆18Updated 6 years ago