danro9685 / CIMLRLinks
Implementations in both Matlab and R of the CIMLR method. The manuscript of the method is available at: https://www.nature.com/articles/s41467-018-06921-8
☆18Updated 2 years ago
Alternatives and similar repositories for CIMLR
Users that are interested in CIMLR are comparing it to the libraries listed below
Sorting:
- SoptSC for single cell data analysis: unsupervised inference of clustering, cell lineage, pseudotime and cell-cell communication network …☆22Updated 4 years ago
- BERMUDA (Batch Effect ReMoval Using Deep Autoencoders) is a novel transfer-learning-based method for batch correction in scRNA-seq data.☆31Updated 5 years ago
- ☆17Updated 5 years ago
- A benchmark of batch-effect correction methods for single-cell RNA sequencing data☆79Updated 3 years ago
- Deep Embedding for Single-cell Clustering☆88Updated last year
- ☆58Updated 4 years ago
- Spatial cellular architecture predicts prognosis in glioblastoma - Nature Communications☆25Updated last year
- ☆45Updated 6 years ago
- Iterative transfer learning with neural network improves clustering and cell type classification in single-cell RNA-seq analysis☆55Updated 3 months ago
- ALD study data analysis☆13Updated 2 years ago
- Code for the spatialLIBD R/Bioconductor package and shiny app☆96Updated last week
- ☆27Updated 5 years ago
- A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better charac…☆43Updated last month
- TIDE (Tumor Immune Dysfunction and Exclusion), a gene expression biomarker to predict the clinical response to immune checkpoint blockade…☆35Updated 3 years ago
- An unsupervised approach for the integrative analysis of single-cell multi-omics data☆30Updated 4 years ago
- Gene expression deconvolution using dampened weighted least squares☆29Updated 4 years ago
- ☆12Updated 5 years ago
- Deep Learning based cell composition analysis with Scaden.☆82Updated 10 months ago
- Python framework for single-cell RNA-seq clustering with special focus on transfer learning.☆18Updated 6 years ago
- Pipeline for characterizing metebolic heterogeneity from single-cell RNA-seq data☆22Updated 3 years ago
- A portable and fast single cell type identifier☆64Updated 4 years ago
- ☆67Updated last year
- Spatial Cellular Estimator for Tumors☆57Updated last month
- Building classifiers using cancer transcriptomes across 33 different cancer-types☆120Updated 6 years ago
- Wishbone is an algorithm to align cells along developmental trajectories with branches☆18Updated 5 years ago
- Mendelian Randomization accounting for Pleiotropy and Sample Structure using genome-wide summary statistics☆43Updated 5 months ago
- Imputation method for scRNA-seq based on low-rank approximation☆77Updated last year
- An algorithm used to classify the cell types from single cell rna sequence data.☆10Updated 4 years ago
- Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data☆27Updated 5 years ago
- Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets☆33Updated 2 years ago