Alternatives and similar repositories for CIMLR

Users that are interested in CIMLR are comparing it to the libraries listed below

• WangShuxiong / SoptSC
  SoptSC for single cell data analysis: unsupervised inference of clustering, cell lineage, pseudotime and cell-cell communication network …
  ☆22Updated 5 years ago
• txWang / BERMUDA
  BERMUDA (Batch Effect ReMoval Using Deep Autoencoders) is a novel transfer-learning-based method for batch correction in scRNA-seq data.
  ☆31Updated 5 years ago
• Shamir-Lab / Multi-Omics-Cancer-Benchmark
  ☆26Updated 5 years ago
• CNRGH / crimmix
  ☆17Updated 6 years ago
• eleozzr / desc
  Deep Embedding for Single-cell Clustering
  ☆88Updated last year
• cantinilab / momix-notebook
  ☆66Updated 2 years ago
• favilaco / deconv_benchmark
  ☆59Updated 5 years ago
• JinmiaoChenLab / Batch-effect-removal-benchmarking
  A benchmark of batch-effect correction methods for single-cell RNA sequencing data
  ☆79Updated 3 years ago
• reyes-m / sepsis_signature
  ☆12Updated 5 years ago
• llniu / ALD-study
  ALD study data analysis
  ☆13Updated 2 years ago
• nicococo / scRNA
  Python framework for single-cell RNA-seq clustering with special focus on transfer learning.
  ☆18Updated 6 years ago
• LieberInstitute / spatialLIBD
  Code for the spatialLIBD R/Bioconductor package and shiny app
  ☆106Updated 2 weeks ago
• jianhuupenn / ItClust
  Iterative transfer learning with neural network improves clustering and cell type classification in single-cell RNA-seq analysis
  ☆54Updated 6 months ago
• greenelab / pancancer
  Building classifiers using cancer transcriptomes across 33 different cancer-types
  ☆122Updated 6 years ago
• jingxinfu / TIDEpy
  TIDE (Tumor Immune Dysfunction and Exclusion), a gene expression biomarker to predict the clinical response to immune checkpoint blockade…
  ☆34Updated 3 years ago
• dpeerlab / wishbone
  Wishbone is an algorithm to align cells along developmental trajectories with branches
  ☆19Updated 5 years ago
• SiyuanHuang1 / ST_Analysis_Handbook
  A Guide to the Analysis of Spatial Transcriptomics
  ☆12Updated last year
• YangLabHKUST / Portal
  Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets
  ☆33Updated 2 years ago
• datapplab / AutoClass
  ☆43Updated 3 years ago
• sqjin / scAI
  An unsupervised approach for the integrative analysis of single-cell multi-omics data
  ☆31Updated 5 years ago
• data2intelligence / SpaCET
  Spatial Cellular Estimator for Tumors
  ☆60Updated this week
• gevaertlab / GBM360
  Spatial cellular architecture predicts prognosis in glioblastoma - Nature Communications
  ☆25Updated 2 years ago
• saezlab / FootprintMethods_on_scRNAseq
  Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data
  ☆27Updated 5 years ago
• jmzeng1314 / METABRIC
  ☆45Updated 6 years ago
• novonordisk-research / xOAML
  xOAML - NatComms
  ☆16Updated last year
• mohuangx / SAVER
  Single-cell RNA-seq Gene Expression Recovery
  ☆111Updated last year
• ELELAB / TCGAbiolinks_examples
  repository with the scripts to run examples of the publications with new functionalities of TCGAbiolinks
  ☆16Updated 3 years ago
• Svvord / iMAP
  A novel unsupervised batch removal framework, called iMAP, based on neural networks.
  ☆35Updated 3 years ago
• klarman-cell-observatory / scPhere
  ☆101Updated 2 years ago
• dtsoucas / DWLS
  Gene expression deconvolution using dampened weighted least squares
  ☆32Updated 4 years ago