danro9685 / CIMLR
Implementations in both Matlab and R of the CIMLR method. The manuscript of the method is available at: https://www.nature.com/articles/s41467-018-06921-8
☆17Updated last year
Related projects ⓘ
Alternatives and complementary repositories for CIMLR
- Contrastive Poisson latent variable models (CPLVMs)☆11Updated 2 years ago
- Marker Selection by matching manifolds and elastic net☆23Updated last month
- Python framework for single-cell RNA-seq clustering with special focus on transfer learning.☆18Updated 5 years ago
- R implementation of Robust Rank Aggregation algortihm☆10Updated 2 years ago
- Source code for integrative nonnegative matrix factorization☆16Updated 6 years ago
- Comparison of dimensionality reduction methods☆30Updated 4 years ago
- SoptSC for single cell data analysis: unsupervised inference of clustering, cell lineage, pseudotime and cell-cell communication network …☆21Updated 3 years ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆22Updated 3 years ago
- Transcriptional regulatory network inference from gene expression and prior information with LASSO-StARS☆14Updated 2 years ago
- ☆63Updated last year
- Supplement to the report in https://greenelab.github.io/czi-hca-report/☆9Updated 5 years ago
- ☆9Updated last year
- BERMUDA (Batch Effect ReMoval Using Deep Autoencoders) is a novel transfer-learning-based method for batch correction in scRNA-seq data.☆27Updated 4 years ago
- Bootstrap imputation for scRNAseq data☆12Updated 4 years ago
- ☆18Updated 7 years ago
- Imputation of single cell RNA-sequencing data with autoencoder☆16Updated 3 years ago
- Compute a 2D embedding of a data matrix given supervised class information.☆12Updated 4 years ago
- Unsupervised cell functional annotation for single-cell RNA-Seq☆22Updated last year
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆34Updated 3 years ago
- Novel joint clustering method with scRNA-seq and CITE-seq data☆8Updated 3 years ago
- Immune Profiling of Atherosclerotic Plaques Identifies☆9Updated last year
- Sparse Canonical Correlation Analysis (sCCA)☆19Updated 2 years ago
- nimfa - A Python Library for Nonnegative Matrix Factorization Techniques☆10Updated 6 years ago
- GEDFN: Graph-Embedded Deep Feedforward Network☆23Updated 5 years ago
- SemI-SUpervised generative Autoencoder models for single cell data☆18Updated 3 years ago
- R package for transfer learning of single-cell RNA-seq denoising☆29Updated 2 years ago
- ☆14Updated last year
- A R/MATLAB package to construct and compare gene regulatory networks from single-cell transcriptomic data☆21Updated 2 years ago
- An unsupervised scRNA-seq analysis workflow with graph attention networks☆24Updated last year